compomics-utilities: an open-source Java library for computational proteomics. - Harald Barsnes; Marc Vaudel; Niklaas Colaert; Kenny Helsens; Albert Sickmann; Frode S. Berven; Lennart Martens (BMC Bioinform., 2011)

The Online Protein Processing Resource (TOPPR): a database and analysis platform for protein processing events. - Niklaas Colaert; Davy Maddelein; Francis Impens; Petra Van Damme; Kim Plasman; Kenny Helsens; Niels Hulstaert; Joël Vandekerckhove; Kris Gevaert; Lennart Martens (Nucleic Acids Res., 2013)

LNCipedia: a database for annotated human lncRNA transcript sequences and structures. - Pieter-Jan Volders; Kenny Helsens; Xiaowei Wang; Björn Menten; Lennart Martens; Kris Gevaert; Jo Vandesompele; Pieter Mestdagh (Nucleic Acids Res., 2013)