Protein Sequence Analysis by Parallel Inference Machine. - Masato Ishikawa; Masaki Hoshida; Makoto Hirosawa; Tomoyuki Toya; Kentaro Onizuka; Katsumi Nitta (FGCS, 1992)

A Multi-Level Description Scheme of Protein Conformation. - Kentaro Onizuka; Stephen T. C. Wong; Masato Ishikawa; Kiyoshi Asai (ISMB, 1993)

A Three-Dimensional Animation System for Protein Folding Simulation. - Masayuki Akahoshi; Kentaro Onizuka; Masato Ishikawa; Kiyoshi Asai (HICSS (5), 1994)

Protein Structure Prediction Based on Multi-Level Description. - Kentaro Onizuka; Hiroshi Tsuda; Masato Ishikawa; Akira Aiba; Kiyoshi Asai; Katunobu Ito (HICSS (5), 1994)

The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein. - Kentaro Onizuka; Masayuki Akahoshi; Masato Ishikawa; Kiyoshi Asai (ISMB, 1994)

New hashing techniques and their application to a protein structure database system. - Tatsuya Akutsu; Kentaro Onizuka; Masato Ishikawa (HICSS (5), 1995)

Parallelization of Space Plasma Particle Simulation. - Yutaka Akiyama; Kiyotaka Misoo; Yoshiharu Omura; Hiroshi Matsumoto; Minoru Saito; Tamotsu Noguchi; Kentaro Onizuka; Makoto Ando (ISHPC, 1997)

Parallel PDB Data Retriever "PDB Diving Booster". - Kentaro Onizuka; Tamotsu Noguchi; Minoru Saito; Yutaka Akiyama (ISHPC, 1997)

PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank). - Tamotsu Noguchi; Kentaro Onizuka; Yutaka Akiyama; Minoru Saito (ISMB, 1997)

Rapid protein fragment search using hash functions based on the Fourier transform. - Tatsuya Akutsu; Kentaro Onizuka; Masato Ishikawa (Comput. Appl. Biosci., 1997)

Biological- and Chemical- Parallel Applications on a PC Cluster. - Yutaka Akiyama; Kentaro Onizuka; Tamotsu Noguchi; Makoto Ando (ISHPC, 1999)

ESCAPE: Parallel Tree Search System for Conformational Analysis of Peptides. - Makoto Ando; Yutaka Akiyama; Kentaro Onizuka; Tamotsu Noguchi (PDPTA, 1999)

Quick selection of representative protein chain sets based on customizable requirements. - Tamotsu Noguchi; Kentaro Onizuka; Makoto Ando; Hideo Matsuda; Yutaka Akiyama (Bioinform., 2000)

Using Data Compression for Multidimensional Distribution Analysis. - Kentaro Onizuka; Tamotsu Noguchi; Yutaka Akiyama; Hideo Matsuda (IEEE Intell. Syst., 2002)