A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data. - Kenzie D. MacIsaac; D. Benjamin Gordon; Lena Nekludova; Duncan T. Odom; Joerg Schreiber; David K. Gifford; Richard A. Young; Ernest Fraenkel (Bioinform., 2006)

An improved map of conserved regulatory sites for Saccharomyces cerevisiae. - Kenzie D. MacIsaac; Ting Wang; D. Benjamin Gordon; David K. Gifford; Gary D. Stormo; Ernest Fraenkel (BMC Bioinform., 2006)

Practical Strategies for Discovering Regulatory DNA Sequence Motifs. - Kenzie D. MacIsaac; Ernest Fraenkel (PLoS Comput. Biol., 2006)

Motifs, binding, and expression: computational studies of transcriptional regulation. - Kenzie D. MacIsaac (2009)

A Quantitative Model of Transcriptional Regulation Reveals the Influence of Binding Location on Expression. - Kenzie D. MacIsaac; Kinyui A. Lo; William Gordon; Shmulik Motola; Tali Mazor; Ernest Fraenkel (PLoS Comput. Biol., 2010)