Designing a Simulation Model of a Self-Maintaining Cellular System. - Kepa Ruiz-Mirazo; Alvaro Moreno; Federico Morán; Juli Peretó; Juan Julián Merelo Guervós (ECAL, 1999)

Organisms and their place in biology. - Kepa Ruiz-Mirazo; Arantza Etxeberria; Alvaro Moreno; Jesús Ibáñez 004 (Theory Biosci., 2000)

Basic Autonomy as a Fundamental Step in the Synthesis of Life. - Kepa Ruiz-Mirazo; Alvaro Moreno (Artif. Life, 2004)

Simulation Model for Functionalized Vesicles: Lipid-Peptide Integration in Minimal Protocells. - Kepa Ruiz-Mirazo; Fabio Mavelli (ECAL, 2007)

Organizational requirements for 'open-ended evolution'. - Kepa Ruiz-Mirazo; Jon Umerez; Alvaro Moreno (ALIFE, 2008)

ENVIRONMENT: A Stochastic Simulation Platform to Study Protocell Dynamics. - Fabio Mavelli; Marco Lerario; Kepa Ruiz-Mirazo (BIOCOMP, 2008)

Modelling autonomy: Simulating the essence of life and cognition. - Xabier E. Barandiaran; Kepa Ruiz-Mirazo (Biosyst., 2008)

On the way towards 'basic autonomous agents': Stochastic simulations of minimal lipid-peptide cells. - Kepa Ruiz-Mirazo; Fabio Mavelli (Biosyst., 2008)

On the Transition from Prebiotic to Proto-biological Membranes: From 'Self-assembly' to 'Self-production'. - Gabriel Piedrafita; Fabio Mavelli; Federico Morán; Kepa Ruiz-Mirazo (ECAL (1), 2009)

'In Vitro' and 'In Silico' Complementary Studies on the Physical Properties of Prebiotic Compartments. - Gabriel Piedrafita; Ben Shirt-Ediss; Fabio Mavelli; Pierre-Alain Monnard; Kepa Ruiz-Mirazo (ALIFE, 2010)

To Burst or Not To Burst - Osmotic Regulation in a Protocell Model Through Precursor Mechano-Sensitive Channels. - Ben Shirt-Ediss; Fabio Mavelli; Kepa Ruiz-Mirazo (ALIFE, 2010)

In Search for Conceptual Bridges: A Review of "Functions in Biological and Artificial Worlds" Functions in Biological and Artificial Worlds. Comparative Philosophical Perspectives. U. Krohs and P. Kroes (Eds.). Vienna Series in Theoretical Biology. (2009, MIT Press.) 302 pages. - Cristian Saborido; Matteo Mossio; Kepa Ruiz-Mirazo (Artif. Life, 2010)

Autonomy in evolution: from minimal to complex life. - Kepa Ruiz-Mirazo; Alvaro Moreno (Synth., 2012)

Steady state analysis of a vesicle bioreactor with mechanosensitive channels. - Ben Shirt-Ediss; Ricard V. Solé; Kepa Ruiz-Mirazo (ECAL, 2013)

A New View of Protocell Metabolism. - Ben Shirt-Ediss; Ricard V. Solé; Kepa Ruiz-Mirazo (ECAL, 2015)

Definitions of life as epistemic tools that reflect and foster the advance of biological knowledge. - Alba Amilburu; Alvaro Moreno; Kepa Ruiz-Mirazo (Synth., 2021)