StarScan: a web server for scanning small RNA targets from degradome sequencing data. - Shun Liu; Jun-Hao Li; Jie Wu 026; Keren Zhou 002; Hui Zhou 006; Jian-Hua Yang; Liang-Hu Qu (Nucleic Acids Res., 2015)

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. - Keren Zhou 002; Shun Liu; Wen-Ju Sun; Ling-Ling Zheng; Hui Zhou 006; Jian-Hua Yang; Liang-Hu Qu (Nucleic Acids Res., 2017)

RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data. - Jia-Jia Xuan; Wen-Ju Sun; Peng-Hui Lin; Keren Zhou 002; Shun Liu; Ling-Ling Zheng; Liang-Hu Qu; Jian-Hua Yang (Nucleic Acids Res., 2018)

dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease. - Ling-Ling Zheng; Keren Zhou 002; Shun Liu; Dingyao Zhang; Ze-Lin Wang; Zhi-Rong Chen; Jian-Hua Yang; Liang-Hu Qu (Nucleic Acids Res., 2018)

ColorCells: a database of expression, classification and functions of lncRNAs in single cells. - Ling-Ling Zheng; Jing-Hua Xiong; Wu-Jian Zheng; Jun-Hao Wang; Zi-Liang Huang; Zhi-Rong Chen; Xin-Yao Sun; Yi-Min Zheng; Keren Zhou 002; Bin Li 060; Shun Liu; Liang-Hu Qu; et al. (Briefings Bioinform., 2021)

ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes. - Junhong Huang; Wu-Jian Zheng; Ping Zhang; Qiao Lin; Zhi-Rong Chen; Jia-Jia Xuan; Chang Liu; Di Wu; Qiaojuan Huang; Ling-Ling Zheng; Shurong Liu; Keren Zhou 002; et al. (Nucleic Acids Res., 2023)