starfish: scalable pipelines for image-based transcriptomics. - Shannon Axelrod; Matthew Cai; Ambrose J. Carr; Jeremy Freeman; Deep Ganguli; Justin T. Kiggins; Brian Long; Tony Tung; Kevin A. Yamauchi (J. Open Source Softw., 2021)

Validation and tuning of in situ transcriptomics image processing workflows with crowdsourced annotations. - Jenny M. Vo-Phamhi; Kevin A. Yamauchi; Rafael Gómez-Sjöberg (PLoS Comput. Biol., 2021)