GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data. - Kevin C. Rue-Albrecht; Paul A. McGettigan; Belinda Hernández; Nicolas C. Nalpas; David A. Magee; Andrew C. Parnell; Stephen V. Gordon; David E. MacHugh (BMC Bioinform., 2016)

iSEE: Interactive SummarizedExperiment Explorer. - Kevin C. Rue-Albrecht; Federico Marini 002; Charlotte Soneson; Aaron T. L. Lun (F1000Research, 2018)

TreeSummarizedExperiment: a S4 class for data with hierarchical structure. - Ruizhu Huang; Charlotte Soneson; Felix G. M. Ernst; Kevin C. Rue-Albrecht; Guangchuang Yu; Stephanie C. Hicks; Mark D. Robinson (F1000Research, 2020)

Learning and teaching biological data science in the Bioconductor community. - Jenny Drnevich; Frederick J. Tan; Fabricio Almeida-Silva; Robert Castelo; Aedín C. Culhane; Sean Davis 001; Maria A. Doyle; Susan P. Holmes; Leo Lahti; Alexandru Mahmoud; Kozo Nishida; Marcel Ramos; et al. (CoRR, 2024)

Learning and teaching biological data science in the Bioconductor community. - Jenny Drnevich; Frederick J. Tan; Fabricio Almeida-Silva; Robert Castelo; Aedín C. Culhane; Sean R. Davis; Maria A. Doyle; Ludwig Geistlinger; Andrew R. Ghazi; Susan P. Holmes; Leo Lahti; Alexandru Mahmoud; et al. (PLoS Comput. Biol., 2025)

Eleven quick tips for writing a Bioconductor package. - Charlotte Soneson; Lori A. Shepherd; Marcel Ramos; Kevin C. Rue-Albrecht; Johannes Rainer; Hervé Pagès; Vincent J. Carey (PLoS Comput. Biol., 2025)