Drug-Drug Interaction Prediction: a Purely SMILES Based Approach. - Bri Bumgardner; Farhan Tanvir; Khaled Mohammed Saifuddin; Esra Akbas (IEEE BigData, 2021)

Drug Abuse Detection in Twitter-sphere: Graph-Based Approach. - Khaled Mohammed Saifuddin; Muhammad Ifte Khairul Islam; Esra Akbas (IEEE BigData, 2021)

Effects of COVID-19 on individuals in Opioid Addiction Recovery. - Khaled Mohammed Saifuddin; Esra Akbas; Max Khanov; Jason Beaman (ICMLA, 2021)

DDI Prediction via Heterogeneous Graph Attention Networks. - Farhan Tanvir; Khaled Mohammed Saifuddin; Esra Akbas (CoRR, 2022)

Predicting Drug-drug Interactions Using Heterogeneous Graph Attention Networks. - Farhan Tanvir; Khaled Mohammed Saifuddin; Muhammad Ifte Khairul Islam; Esra Akbas (BCB, 2023)

Seq-HyGAN: Sequence Classification via Hypergraph Attention Network. - Khaled Mohammed Saifuddin; Corey May; Farhan Tanvir; Muhammad Ifte Khairul Islam; Esra Akbas (CIKM, 2023)

HyGNN: Drug-Drug Interaction Prediction via Hypergraph Neural Network. - Khaled Mohammed Saifuddin; Briana Bumgardner; Farhan Tanvir; Esra Akbas (ICDE, 2023)

Topology-guided Hypergraph Transformer Network: Unveiling Structural Insights for Improved Representation. - Khaled Mohammed Saifuddin; Mehmet Emin Aktas; Esra Akbas (CoRR, 2023)

HeTriNet: Heterogeneous Graph Triplet Attention Network for Drug-Target-Disease Interaction. - Farhan Tanvir; Khaled Mohammed Saifuddin; Tanvir Hossain; Arunkumar Bagavathi; Esra Akbas (CoRR, 2023)

DyGCL: Dynamic Graph Contrastive Learning For Event Prediction. - Muhammed Ifte Khairul Islam; Khaled Mohammed Saifuddin; Tanvir Hossain; Esra Akbas (IEEE Big Data, 2024)

HeTAN: Heterogeneous Graph Triplet Attention Network for Drug Repurposing. - Farhan Tanvir; Khaled Mohammed Saifuddin; Tanvir Hossain; Arunkumar Bagavathi; Esra Akbas (DSAA, 2024)

Tackling Oversmoothing in GNN via Graph Sparsification. - Tanvir Hossain; Khaled Mohammed Saifuddin; Muhammad Ifte Khairul Islam; Farhan Tanvir; Esra Akbas (ECML/PKDD (8), 2024)

DyGCL: Dynamic Graph Contrastive Learning For Event Prediction. - Muhammad Ifte Khairul Islam; Khaled Mohammed Saifuddin; Tanvir Hossain; Esra Akbas (CoRR, 2024)

Tackling Oversmoothing in GNN via Graph Sparsification: A Truss-based Approach. - Tanvir Hossain; Khaled Mohammed Saifuddin; Muhammad Ifte Khairul Islam; Farhan Tanvir; Esra Akbas (CoRR, 2024)

DDI Prediction With Heterogeneous Information Network - Meta-Path Based Approach. - Farhan Tanvir; Khaled Mohammed Saifuddin; Muhammad Ifte Khairul Islam; Esra Akbas (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

HyperGCL: Multi-Modal Graph Contrastive Learning via Learnable Hypergraph Views. - Khaled Mohammed Saifuddin; Shihao Ji 001; Esra Akbas (CoRR, 2025)