Residue-residue contact prediction in the HIV-1 envelope glycoprotein complex. - Reda Rawi; Khalid Kunji; Abdelali Haoudi; Halima Bensmail (BIBM, 2015)

COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator. - Reda Rawi; Raghvendra Mall; Khalid Kunji; Mohammed El Anbari; Michaël Aupetit 001; Ehsan Ullah; Halima Bensmail (BMC Bioinform., 2016)

Differential Community Detection in Paired Biological Networks. - Raghvendra Mall; Ehsan Ullah; Khalid Kunji; Fulvio D'Angelo; Halima Bensmail; Michele Ceccarelli (BCB, 2017)

An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity. - Raghvendra Mall; Ehsan Ullah; Khalid Kunji; Halima Bensmail; Michele Ceccarelli (BIBM, 2017)

DeepSol: a deep learning framework for sequence-based protein solubility prediction. - Sameer Khurana; Reda Rawi; Khalid Kunji; Gwo-Yu Chuang; Halima Bensmail; Raghvendra Mall (Bioinform., 2018)

GIGI-Quick: a fast approach to impute missing genotypes in genome-wide association family data. - Khalid Kunji; Ehsan Ullah; Alejandro Q. Nato; Ellen M. Wijsman; Mohamad Saad 001 (Bioinform., 2018)

PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine. - Reda Rawi; Raghvendra Mall; Khalid Kunji; Chen-Hsiang Shen; Peter D. Kwong; Gwo-Yu Chuang (Bioinform., 2018)

An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity. - Raghvendra Mall; Ehsan Ullah; Khalid Kunji; Michele Ceccarelli; Halima Bensmail (F1000Research, 2018)

DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction. - Abdurrahman Elbasir; Balasubramanian Moovarkumudalvan; Khalid Kunji; Prasanna R. Kolatkar; Raghvendra Mall; Halima Bensmail (Bioinform., 2019)

BCrystal: an interpretable sequence-based protein crystallization predictor. - Abdurrahman Elbasir; Raghvendra Mall; Khalid Kunji; Reda Rawi; Zeyaul Islam; Gwo-Yu Chuang; Prasanna R. Kolatkar; Halima Bensmail (Bioinform., 2020)

Network-based identification of key master regulators associated with an immune-silent cancer phenotype. - Raghvendra Mall; Mohamad Saad 001; Jessica Roelands; Darawan Rinchai; Khalid Kunji; Hossam Almeer; Wouter Hendrickx; Francesco M. Marincola; Michele Ceccarelli; Davide Bedognetti (Briefings Bioinform., 2021)

PopMLvis: a tool for analysis and visualization of population structure using genotype data from genome-wide association studies. - Mohamed Elshrif; Keivin Isufaj; Khalid Kunji; Mohamad Saad 001 (BMC Bioinform., 2024)