eResearch Solutions for High Throughput Structural Biology. - Noel G. Faux; Anthony Beitz; Mark A. Bate; Abdullah A. Amin; Ian Atkinson; Colin Enticott; Khalid Mahmood 001; Matthew Swift; Andrew E. Treloar; David Abramson 001; James C. Whisstock; Ashley M. Buckle (eScience, 2007)

Protein Folding Database (PFD 2.0): an online environment for the International Foldeomics Consortium. - Kate F. Fulton; Mark A. Bate; Noel G. Faux; Khalid Mahmood 001; Chris Betts; Ashley M. Buckle (Nucleic Acids Res., 2007)

EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes. - Khalid Mahmood 001; Arun Siddharth Konagurthu; Jiangning Song; Ashley M. Buckle; Geoffrey I. Webb; James C. Whisstock (Bioinform., 2010)

Cascleave: towards more accurate prediction of caspase substrate cleavage sites. - Jiangning Song; Hao Tan; Hong-Bin Shen; Khalid Mahmood 001; Sarah E. Boyd; Geoffrey I. Webb; Tatsuya Akutsu; James C. Whisstock (Bioinform., 2010)

Bioinformatic Approaches for Predicting substrates of Proteases. - Jiangning Song; Hao Tan; Sarah E. Boyd; Hong-Bin Shen; Khalid Mahmood 001; Geoffrey I. Webb; Tatsuya Akutsu; James C. Whisstock; Robert N. Pike (J. Bioinform. Comput. Biol., 2011)

Predicting giant transmembrane β-barrel architecture. - Cyril F. Reboul; Khalid Mahmood 001; James C. Whisstock; Michelle A. Dunstone (Bioinform., 2012)