GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. - Jason Montojo; Khalid Zuberi; Harold Rodriguez; Farzana Kazi; George Wright; Sylva L. Donaldson; Quaid Morris; Gary D. Bader (Bioinform., 2010)

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. - David Warde-Farley; Sylva L. Donaldson; Ovi Comes; Khalid Zuberi; Rashad Badrawi; Pauline Chao; Max Franz; Chris Grouios; Farzana Kazi; Christian Tannus Lopes; Anson Maitland; Sara Mostafavi; et al. (Nucleic Acids Res., 2010)

RBPDB: a database of RNA-binding specificities. - Kate B. Cook; Hilal Kazan; Khalid Zuberi; Quaid Morris; Timothy R. Hughes (Nucleic Acids Res., 2011)

GeneMANIA Prediction Server 2013 Update. - Khalid Zuberi; Max Franz; Harold Rodriguez; Jason Montojo; Christian Tannus Lopes; Gary D. Bader; Quaid Morris (Nucleic Acids Res., 2013)

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli. - James Vlasblom; Khalid Zuberi; Harold Rodriguez; Roland Arnold; Alla Gagarinova; Viktor Deineko; Ashwani Kumar; Elisa Leung; Kamran Rizzolo; Bahram Samanfar; Luke Chang; Sadhna Phanse; et al. (Bioinform., 2015)

COSSMO: predicting competitive alternative splice site selection using deep learning. - Hannes Bretschneider; Shreshth Gandhi; Amit G. Deshwar; Khalid Zuberi; Brendan J. Frey (Bioinform., 2018)

GeneMANIA update 2018. - Max Franz; Harold Rodriguez; Christian Tannus Lopes; Khalid Zuberi; Jason Montojo; Gary D. Bader; Quaid Morris (Nucleic Acids Res., 2018)