New space warping method for the simulation of large-scale macromolecular conformational changes. - Khuloud Jaqaman; Peter J. Ortoleva (J. Comput. Chem., 2002)

Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics. - Khuloud Jaqaman; Jonas F. Dorn; Eugenio Marco; Peter K. Sorger; Gaudenz Danuser (Bioinform., 2007)

From particle tracking to molecular interactions. - Khuloud Jaqaman (ISBI, 2008)

Piecewise-Stationary Motion Modeling and Iterative Smoothing to Track Heterogeneous Particle Motions in Dense Environments. - Philippe Roudot; Liya Ding 001; Khuloud Jaqaman; Charles Kervrann; Gaudenz Danuser (IEEE Trans. Image Process., 2017)

Adaptive multiorientation resolution analysis of complex filamentous network images. - Mark Kittisopikul; Amir Vahabikashi; Takeshi Shimi; Robert D. Goldman; Khuloud Jaqaman (Bioinform., 2020)

Geometric deep learning of particle motion by MAGIK. - Bahare Fatemi; Jonathan Halcrow; Khuloud Jaqaman (Nat. Mac. Intell., 2023)