Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference. - Kieran R. Campbell; Christopher Yau (PLoS Comput. Biol., 2016)

switchde: inference of switch-like differential expression along single-cell trajectories. - Kieran R. Campbell; Christopher Yau (Bioinform., 2017)

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R. - Davis J. McCarthy; Kieran R. Campbell; Aaron T. L. Lun; Quin F. Wills (Bioinform., 2017)

Covariate Gaussian Process Latent Variable Models. - Kaspar Märtens; Kieran R. Campbell; Christopher Yau (CoRR, 2018)

Decomposing feature-level variation with Covariate Gaussian Process Latent Variable Models. - Kaspar Märtens; Kieran R. Campbell; Christopher Yau (ICML, 2019)

A descriptive marker gene approach to single-cell pseudotime inference. - Kieran R. Campbell; Christopher Yau (Bioinform., 2019)

12 Grand Challenges in Single-Cell Data Science. - David Laehnemann; Johannes Köster; Ewa Szczurek; Davis J. McCarthy; Stephanie C. Hicks; Mark D. Robinson; Catalina A. Vallejos; Niko Beerenwinkel; Kieran R. Campbell; Ahmed Mahfouz; Luca Pinello; Pavel Skums; et al. (PeerJ Prepr., 2019)

Multi-objective Bayesian Optimization with Heuristic Objectives for Biomedical and Molecular Data Analysis Workflows. - Alina Selega; Kieran R. Campbell (Trans. Mach. Learn. Res., 2023)