A Model to Investigate the Feasibility of Fdg as a Surrogate Marker of Hypoxia. - Catherine J. Kelly; Kieran Smallbone; Tiina Roose; Michael Brady 001 (ISBI, 2007)

Further developments towards a genome-scale metabolic model of yeast. - Paul D. Dobson; Kieran Smallbone; Daniel Jameson; Evangelos Simeonidis; Karin Lanthaler; Pinar Pir; Chuan Lu; Neil Swainston; Warwick B. Dunn; Paul Fisher; Duncan Hull; Marie Brown; et al. (BMC Syst. Biol., 2010)

Towards a genome-scale kinetic model of cellular metabolism. - Kieran Smallbone; Evangelos Simeonidis; Neil Swainston; Pedro Mendes 001 (BMC Syst. Biol., 2010)

Kinetic modelling of large-scale metabolic networks. - Pedro Mendes 001; Natalie J. Stanford; Kieran Smallbone (CMSB, 2011)

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. - Neil Swainston; Kieran Smallbone; Pedro Mendes 001; Douglas B. Kell; Norman W. Paton (J. Integr. Bioinform., 2011)

Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network. - Benjamin D. Heavner; Kieran Smallbone; Brandon Barker; Pedro Mendes 001; Larry P. Walker (BMC Syst. Biol., 2012)

Improving metabolic flux predictions using absolute gene expression data. - Dave Lee; Kieran Smallbone; Warwick B. Dunn; Ettore Murabito; Catherine Winder; Douglas B. Kell; Pedro Mendes 001; Neil Swainston (BMC Syst. Biol., 2012)

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance. - Benjamin D. Heavner; Kieran Smallbone; Nathan D. Price 001; Larry P. Walker (Database J. Biol. Databases Curation, 2013)

BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (CoRR, 2014)

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid 004; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes 001; Johannes Jaeger; et al. (BMC Syst. Biol., 2015)

A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data. - Brandon E. Barker; Narayanan Sadagopan; Yiping Wang; Kieran Smallbone; Christopher R. Myers; Hongwei Xi 001; Jason W. Locasale; Zhenglong Gu (Comput. Biol. Chem., 2015)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli. - Pierre Millard; Kieran Smallbone; Pedro Mendes 001 (PLoS Comput. Biol., 2017)