Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinson's disease using DIGE. - Kim Kultima; Birger Scholz; Henrik Alm; Karl Sköld; Marcus Svensson; Alan R. Crossman; Erwan Bezard; Per E. Andrén; Ingrid Lönnstedt (BMC Bioinform., 2006)

The future of metabolomics in ELIXIR. - Merlijn N. van Rijswijk; Charlie Beirnaert; Christophe Caron; Marta Cascante; Victoria Dominguez Del Angel; Warwick B. Dunn; Timothy M. D. Ebbels; Franck Giacomoni; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; Jose L. Izquierdo-García; et al. (F1000Research, 2017)

Interoperable and scalable data analysis with microservices: applications in metabolomics. - Payam Emami Khoonsari; Pablo A. Moreno; Sven Bergmann; Joachim Burman; Marco Capuccini; Matteo Carone; Marta Cascante; Pedro de Atauri; Carles Foguet; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; et al. (Bioinform., 2019)

Container-based bioinformatics with Pachyderm. - Jon Ander Novella; Payam Emami Khoonsari; Stephanie Herman; Daniel Whitenack; Marco Capuccini; Joachim Burman; Kim Kultima; Ola Spjuth (Bioinform., 2019)

Approaches for containerized scientific workflows in cloud environments with applications in life science. - Ola Spjuth; Marco Capuccini; Matteo Carone; Anders Larsson; Wesley Schaal; Jon Ander Novella; Oliver Stein; Morgan Ekmefjord; Paolo Di Tommaso; Evan W. Floden; Cédric Notredame; Pablo A. Moreno; et al. (F1000Research, 2021)

Predicting protein network topology clusters from chemical structure using deep learning. - Akshai P. Sreenivasan; Philip J. Harrison; Wesley Schaal; Damian J. Matuszewski; Kim Kultima; Ola Spjuth (J. Cheminformatics, 2022)

Conformal prediction enables disease course prediction and allows individualized diagnostic uncertainty in multiple sclerosis. - Akshai P. Sreenivasan; Aina Vaivade; Yassine Noui; Payam Emami Khoonsari; Joachim Burman; Ola Spjuth; Kim Kultima (npj Digit. Medicine, 2025)