V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data. - Susana Posada-Céspedes; David Seifert; Ivan Topolsky; Kim Philipp Jablonski; Karin J. Metzner; Niko Beerenwinkel (Bioinform., 2021)

Sustainable data analysis with Snakemake. - Felix Mölder; Kim Philipp Jablonski; Brice Letcher; Michael B. Hall; Christopher Tomkins-Tinch; Vanessa V. Sochat; Jan Forster; Soohyun Lee; Sven Twardziok; Alexander Kanitz; Andreas Wilm; Manuel Holtgrewe; et al. (F1000Research, 2021)

Identifying cancer pathway dysregulations using differential causal effects. - Kim Philipp Jablonski; Martin Pirkl; Domagoj Cevid; Peter Bühlmann; Niko Beerenwinkel (Bioinform., 2022)

Coherent pathway enrichment estimation by modeling inter-pathway dependencies using regularized regression. - Kim Philipp Jablonski; Niko Beerenwinkel (Bioinform., 2023)

General Geospatial Inference with a Population Dynamics Foundation Model. - Mohit Agarwal; Mimi Sun; Chaitanya Kamath; Arbaaz Muslim; Prithul Sarker; Joydeep Paul; Hector Yee; Marcin Sieniek; Kim Philipp Jablonski; Yael Mayer; David Fork; Sheila de Guia; et al. (CoRR, 2024)