Functional Alignment of Regulatory Networks: A Study of Temperate Phages. - Ala Trusina; Kim Sneppen; Ian B. Dodd; Keith E. Shearwin; J. Barry Egan (PLoS Comput. Biol., 2005)

Networks and our Limited Information Horizon. - Martin Rosvall; Kim Sneppen (Int. J. Bifurc. Chaos, 2007)

UV-Induced Mutagenesis in Escherichia coli SOS Response: A Quantitative Model. - Sandeep Krishna; Sergei Maslov; Kim Sneppen (PLoS Comput. Biol., 2007)

One hub-one process: a tool based view on regulatory network topology. - Jacob Axelsen; Sebastian Bernhardsson; Kim Sneppen (BMC Syst. Biol., 2008)

The Generation of Promoter-Mediated Transcriptional Noise in Bacteria. - Namiko Mitarai; Ian B. Dodd; Michael T. Crooks; Kim Sneppen (PLoS Comput. Biol., 2008)

Pathway identification by network pruning in the metabolic network of Escherichia coli. - Philip Gerlee; L. Lizana; Kim Sneppen (Bioinform., 2009)

Longevity of orders is related to the longevity of their constituent genera rather than genus richness. - Stefan Bornholdt; Kim Sneppen; Hildegard Westphal (Theory Biosci., 2009)

Information spreading and development of cultural centers - Bartlomiej Dybiec; Namiko Mitarai; Kim Sneppen (CoRR, 2012)

A Simple Histone Code Opens Many Paths to Epigenetics. - Kim Sneppen; Ian B. Dodd (PLoS Comput. Biol., 2012)

Conditional Cooperativity of Toxin - Antitoxin Regulation Can Mediate Bistability between Growth and Dormancy. - Ilaria Cataudella; Kim Sneppen; Kenn Gerdes; Namiko Mitarai (PLoS Comput. Biol., 2013)

Do Bitcoins make the world go round? On the dynamics of competing crypto-currencies. - Stefan Bornholdt; Kim Sneppen (CoRR, 2014)

Diversity Waves in Collapse-Driven Population Dynamics. - Sergei Maslov; Kim Sneppen (PLoS Comput. Biol., 2015)

Food Web Assembly Rules for Generalized Lotka-Volterra Equations. - Jan O. Haerter; Namiko Mitarai; Kim Sneppen (PLoS Comput. Biol., 2016)

From kill the winner to eliminate the winner in open phage-bacteria systems. - Anastasios Marantos; Namiko Mitarai; Kim Sneppen (PLoS Comput. Biol., 2022)

Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2. - Bjarke Frost Nielsen; Chadi M. Saad-Roy; Yimei Li; Kim Sneppen; Lone Simonsen; Cécile Viboud; Simon A. Levin; Bryan T. Grenfell (PLoS Comput. Biol., 2023)