An object-oriented library for computational protein design. - Arnab B. Chowdry; Kimberly A. Reynolds; Melinda S. Hanes; Mark Voorhies; Navin Pokala; Tracy M. Handel (J. Comput. Chem., 2007)

Identifying conformational changes of the beta2 adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators. - Kimberly A. Reynolds; Vsevolod Katritch; Ruben Abagyan (J. Comput. Aided Mol. Des., 2009)

Evolution-Based Functional Decomposition of Proteins. - Olivier Rivoire; Kimberly A. Reynolds; Rama Ranganathan (PLoS Comput. Biol., 2016)