WormBase: a multi-species resource for nematode biology and genomics. - Todd W. Harris; Nansheng Chen; Fiona Cunningham; Marcela K. Tello-Ruiz; Igor Antoshechkin; Carol Bastiani; Tamberlyn Bieri; Darin Blasiar; Keith Bradnam; Juancarlos Chan; Chao-Kung Chen; Wen J. Chen; et al. (Nucleic Acids Res., 2004)

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. - Nansheng Chen; Todd W. Harris; Igor Antoshechkin; Carol Bastiani; Tamberlyn Bieri; Darin Blasiar; Keith Bradnam; Payan Canaran; Juancarlos Chan; Chao-Kung Chen; Wen J. Chen; Fiona Cunningham; et al. (Nucleic Acids Res., 2005)

WormBase: better software, richer content. - Erich M. Schwarz; Igor Antoshechkin; Carol Bastiani; Tamberlyn Bieri; Darin Blasiar; Payan Canaran; Juancarlos Chan; Nansheng Chen; Wen J. Chen; Paul Davis 001; Tristan J. Fiedler; Lisa R. Girard; et al. (Nucleic Acids Res., 2006)

WormBase: new content and better access. - Tamberlyn Bieri; Darin Blasiar; Philip Ozersky; Igor Antoshechkin; Carol Bastiani; Payan Canaran; Juancarlos Chan; Nansheng Chen; Wen J. Chen; Paul Davis 001; Tristan J. Fiedler; Lisa R. Girard; et al. (Nucleic Acids Res., 2007)

Textpresso - an Information Retrieval and Extraction System for Biological Literature. - Hans-Michael Müller; Arun Rangarajan; Tracy K. Teal; Kimberly Van Auken; Juancarlos Chan; Paul W. Sternberg (Ontologies and Text Mining for Life Sciences, 2008)

WormBase 2007. - Anthony Rogers; Igor Antoshechkin; Tamberlyn Bieri; Darin Blasiar; Carol Bastiani; Payan Canaran; Juancarlos Chan; Wen J. Chen; Paul Davis 001; Jolene Fernandes; Tristan J. Fiedler; Michael Han 001; et al. (Nucleic Acids Res., 2008)

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. - Kimberly Van Auken; Joshua Jaffery; Juancarlos Chan; Hans-Michael Müller; Paul W. Sternberg (BMC Bioinform., 2009)

WormBase: a comprehensive resource for nematode research. - Todd W. Harris; Igor Antoshechkin; Tamberlyn Bieri; Darin Blasiar; Juancarlos Chan; Wen J. Chen; Norie De La Cruz; Paul Davis 001; Margaret J. Duesbury; Ruihua Fang; Jolene Fernandes; Michael Han 001; et al. (Nucleic Acids Res., 2010)

The BioGRID Interaction Database: 2011 update. - Chris Stark; Bobby-Joe Breitkreutz; Andrew Chatr-aryamontri; Lorrie Boucher; Rose Oughtred; Michael S. Livstone; Julie Nixon; Kimberly Van Auken; Xiaodong Wang 008; Xiaoqi Shi; Teresa Reguly; Jennifer M. Rust; et al. (Nucleic Acids Res., 2011)

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. - Kimberly Van Auken; Petra Fey; Tanya Z. Berardini; Robert J. Dodson; Laurel Cooper; Donghui Li; Juancarlos Chan; Yuling Li 005; Siddhartha Basu; Hans-Michael Müller; Rex L. Chisholm; Eva Huala; et al. (Database J. Biol. Databases Curation, 2012)

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. - Pascale Gaudet; Cecilia N. Arighi; Frederic B. Bastian; Alex Bateman; Judith A. Blake; J. Michael Cherry; Peter D'Eustachio; Robert D. Finn; Michelle G. Giglio; Lynette Hirschman; Renate Kania; William Klimke; et al. (Database J. Biol. Databases Curation, 2012)

Automatic categorization of diverse experimental information in the bioscience literature. - Ruihua Fang; Gary Schindelman; Kimberly Van Auken; Jolene Fernandes; Wen J. Chen; Xiaodong Wang 008; Paul Davis 001; Mary Ann Tuli; Steven J. Marygold; Gillian H. Millburn; Beverley Matthews; Haiyan Zhang; et al. (BMC Bioinform., 2012)

WormBase 2012: more genomes, more data, new website. - Karen Yook; Todd W. Harris; Tamberlyn Bieri; Abigail Cabunoc; Juancarlos Chan; Wen J. Chen; Paul Davis 001; Norie De La Cruz; Adrian Duong; Ruihua Fang; Uma Ganesan; Christian A. Grove; et al. (Nucleic Acids Res., 2012)

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. - Cecilia N. Arighi; Ben Carterette; K. Bretonnel Cohen; Martin Krallinger; W. John Wilbur; Petra Fey; Robert J. Dodson; Laurel Cooper; Ceri E. Van Slyke; Wasila M. Dahdul; Paula M. Mabee; Donghui Li; et al. (Database J. Biol. Databases Curation, 2013)

A guide to best practices for Gene Ontology (GO) manual annotation. - Rama Balakrishnan; Midori A. Harris; Rachael P. Huntley; Kimberly Van Auken; J. Michael Cherry (Database J. Biol. Databases Curation, 2013)

BC4GO: a full-text corpus for the BioCreative IV GO task. - Kimberly Van Auken; Mary L. Schaeffer; Peter McQuilton; Stanley J. F. Laulederkind; Donghui Li; Shur-Jen Wang; G. Thomas Hayman; Susan Tweedie; Cecilia N. Arighi; James Done; Hans-Michael Müller; Paul W. Sternberg; et al. (Database J. Biol. Databases Curation, 2014)

Overview of the gene ontology task at BioCreative IV. - Yuqing Mao; Kimberly Van Auken; Donghui Li; Cecilia N. Arighi; Peter McQuilton; G. Thomas Hayman; Susan Tweedie; Mary L. Schaeffer; Stanley J. F. Laulederkind; Shur-Jen Wang; Julien Gobeill; Patrick Ruch; et al. (Database J. Biol. Databases Curation, 2014)

A method for increasing expressivity of Gene Ontology annotations using a compositional approach. - Rachael P. Huntley; Midori A. Harris; Yasmin Alam-Faruque; Judith A. Blake; Seth Carbon; Heiko Dietze; Emily C. Dimmer; Rebecca E. Foulger; David P. Hill; Varsha K. Khodiyar; Antonia Lock; Jane Lomax; et al. (BMC Bioinform., 2014)

WormBase 2014: new views of curated biology. - Todd W. Harris; Joachim Baran; Tamberlyn Bieri; Abigail Cabunoc; Juancarlos Chan; Wen J. Chen; Paul Davis 001; James Done; Christian A. Grove; Kevin L. Howe; Ranjana Kishore; Raymond Y. N. Lee; et al. (Nucleic Acids Res., 2014)

Overview of the interactive task in BioCreative V. - Qinghua Wang 003; Shabbir Syed-Abdul; Lara Almeida; Sophia Ananiadou; Yalbi I. Balderas-Martínez; Riza Batista-Navarro; David Campos 001; Lucy Chilton; Hui-Jou Chou; Gabriela Contreras; Laurel Cooper; Hong-Jie Dai; et al. (Database J. Biol. Databases Curation, 2016)

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. - Jonathan M. Mortensen; Natalie Telis; Jacob J. Hughey; Hua Fan-Minogue; Kimberly Van Auken; Michel Dumontier; Mark A. Musen (J. Biomed. Informatics, 2016)

WormBase 2016: expanding to enable helminth genomic research. - Kevin L. Howe; Bruce J. Bolt; Scott Cain; Juancarlos Chan; Wen J. Chen; Paul Davis 001; James Done; Thomas A. Down; Sibyl Gao; Christian A. Grove; Todd W. Harris; Ranjana Kishore; et al. (Nucleic Acids Res., 2016)

Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature. - Hans-Michael Müller; Kimberly Van Auken; Yuling Li 005; Paul W. Sternberg (BMC Bioinform., 2018)

WormBase 2017: molting into a new stage. - Raymond Y. N. Lee; Kevin L. Howe; Todd W. Harris; Valerio Arnaboldi; Scott Cain; Juancarlos Chan; Wen J. Chen; Paul Davis 001; Sibyl Gao; Christian A. Grove; Ranjana Kishore; Hans-Michael Müller; et al. (Nucleic Acids Res., 2018)

Annotation of gene product function from high-throughput studies using the Gene Ontology. - Helen Attrill; Pascale Gaudet; Rachael P. Huntley; Ruth C. Lovering; Stacia R. Engel; Sylvain Poux; Kimberly M. Van Auken; George E. Georghiou; Marcus C. Chibucos; Tanya Z. Berardini; Valerie Wood; Harold J. Drabkin; et al. (Database J. Biol. Databases Curation, 2019)

Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase. - Valerio Arnaboldi; Daniela Raciti; Kimberly Van Auken; Juancarlos Chan; Hans-Michael Müller; Paul W. Sternberg (Database J. Biol. Databases Curation, 2020)

Alliance of Genome Resources Portal: unified model organism research platform. - Julie Agapite; Laurent-Philippe Albou; Suzi A. Aleksander; Joanna Argasinska; Valerio Arnaboldi; Helen Attrill; Susan M. Bello; Judith A. Blake; Olin Blodgett; Yvonne M. Bradford; Carol J. Bult; Scott Cain; et al. (Nucleic Acids Res., 2020)

WormBase: a modern Model Organism Information Resource. - Todd W. Harris; Valerio Arnaboldi; Scott Cain; Juancarlos Chan; Wen J. Chen; Jae-Hyoung Cho; Paul Davis 001; Sibyl Gao; Christian A. Grove; Ranjana Kishore; Raymond Y. N. Lee; Hans-Michael Müller; et al. (Nucleic Acids Res., 2020)

Reactome and the Gene Ontology: digital convergence of data resources. - Benjamin M. Good; Kimberly Van Auken; David P. Hill; Huaiyu Mi; Seth Carbon; James P. Balhoff; Laurent-Philippe Albou; Paul D. Thomas; Christopher J. Mungall; Judith A. Blake; Peter D'Eustachio (Bioinform., 2021)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

Semantic representation of neural circuit knowledge in Caenorhabditis elegans. - Sharan J. Prakash; Kimberly M. Van Auken; David P. Hill; Paul W. Sternberg (Brain Informatics, 2023)

Enrichment on steps, not genes, improves inference of differentially expressed pathways. - Nicholas Markarian; Kimberly M. Van Auken; Dustin Ebert; Paul W. Sternberg (PLoS Comput. Biol., 2024)

Correction: Semantic representation of neural circuit knowledge in Caenorhabditis elegans. - Sharan J. Prakash; Kimberly M. Van Auken; David P. Hill; Paul W. Sternberg (Brain Informatics, 2024)