Correlating gene promoters and expression in gene disruption experiments. - Kimmo Palin; Esko Ukkonen; Alvis Brazma; Jaak Vilo (ECCB, 2002)

Fast motif matching revisited: high-order PWMs, SNPs and indels. - Janne H. Korhonen; Kimmo Palin; Jussi Taipale; Esko Ukkonen (Bioinform., 2017)