REAL: an efficient REad ALigner for next generation sequencing reads. - Kimon Frousios; Costas S. Iliopoulos; Laurent Mouchard; Solon P. Pissis; German Tischler (BCB, 2010)

Approximate string-matching with a single gap for sequence alignment. - Tomás Flouri; Kunsoo Park; Kimon Frousios; Solon P. Pissis; Costas S. Iliopoulos; German Tischler (BCB, 2011)

Bioinformatic analysis of genomic sequencing data : read alignment and variant evaluation. - Kimon Frousios (2014)