DBComposer: An R package for integrative analysis and management of gene expression microarray data. - Lingjia Kong; Kaisa-Leena Aho; Kirsi Granberg; Christophe Roos; Reija Autio (GENSiPS, 2013)

Sorad: a systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements. - Tarmo Äijö; Kirsi Granberg; Harri Lähdesmäki (Bioinform., 2013)