Sparse Covariance Modeling in High Dimensions with Gaussian Processes. - Rui Li 002; Kishan KC; Feng Cui; Justin Domke; Anne R. Haake (NeurIPS, 2018)

GNE: a deep learning framework for gene network inference by aggregating biological information. - Kishan KC; Rui Li 002; Feng Cui; Qi Yu 001; Anne R. Haake (BMC Syst. Biol., 2019)

Interpretable Structured Learning with Sparse Gated Sequence Encoder for Protein-Protein Interaction Prediction. - Kishan KC; Feng Cui; Anne R. Haake; Rui Li 002 (ICPR, 2020)

Histopathological distinction of non-invasive and invasive bladder cancers using machine learning approaches. - Peng-Nien Yin; Kishan KC; Shishi Wei; Qi Yu 001; Rui Li 002; Anne R. Haake; Hiroshi Miyamoto; Feng Cui (BMC Medical Informatics Decis. Mak., 2020)

Joint Inference for Neural Network Depth and Dropout Regularization. - Kishan K. C.; Rui Li 002; Mahdi Gilany (NeurIPS, 2021)

Machine learning predicts nucleosome binding modes of transcription factors. - Kishan KC; Sridevi K. Subramanya; Rui Li 002; Feng Cui (BMC Bioinform., 2021)

Predicting Biomedical Interactions with Probabilistic Model Selection for Graph Neural Networks. - Kishan K. C.; Rui Li 002; Paribesh Regmi; Anne R. Haake (CoRR, 2022)

Predicting Biomedical Interactions With Higher-Order Graph Convolutional Networks. - Kishan KC; Rui Li 002; Feng Cui; Anne R. Haake (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Question-Context Alignment and Answer-Context Dependencies for Effective Answer Sentence Selection. - Minh Van Nguyen 001; Kishan KC; Toàn Quoc Nguyên; Thien Huu Nguyen; Ankit Chadha; Thuy Vu (INTERSPEECH, 2023)

Efficient Fine-Tuning Large Language Models for Knowledge-Aware Response Planning. - Minh Nguyen 007; Kishan K. C.; Toàn Quoc Nguyên; Ankit Chadha; Thuy Vu (ECML/PKDD (2), 2023)

Reinforcement Learning from Answer Reranking Feedback for Retrieval-Augmented Answer Generation. - Minh Nguyen 007; Toàn Quoc Nguyên; Kishan KC; Zeyu Zhang 002; Thuy Vu (INTERSPEECH, 2024)

Bayesian Neighborhood Adaptation for Graph Neural Networks. - Paribesh Regmi; Rui Li 002; Kishan K. C. (Trans. Mach. Learn. Res., 2025)