How do alignment programs perform on sequencing data with varying qualities and from repetitive regions? - Xiaoqing Yu; Kishore Guda; Joseph Willis; Martina Veigl; Zhenghe Wang; Sanford Markowitz; Mark D. Adams; Shuying Sun (BioData Min., 2012)

SYSMut: decoding the functional significance of rare somatic mutations in cancer. - Sirvan Khalighi; Peronne Joseph; Deepak Babu; Salendra Singh; Thomas LaFramboise; Kishore Guda; Vinay Varadan (Briefings Bioinform., 2022)