Kiyoko F. Aoki-Kinoshita

According to our database1, Kiyoko F. Aoki-Kinoshita authored at least 38 papers between 2000 and 2017.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2017
WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures.
Journal of Chemical Information and Modeling, 2017

Development and application of an algorithm to compute weighted multiple glycan alignments.
Bioinformatics, 2017

2016
GlyTouCan 1.0 - The international glycan structure repository.
Nucleic Acids Research, 2016

A systematic framework to derive N-glycan biosynthesis process and the automated construction of glycosylation networks.
BMC Bioinformatics, 2016

The Glycome Analytics Platform: an integrative framework for glycobioinformatics.
Bioinformatics, 2016

2015
On using physico-chemical properties of amino acids in string kernels for protein classification via support vector machines.
J. Systems Science & Complexity, 2015

Implementation of linked data in the life sciences at BioHackathon 2011.
J. Biomedical Semantics, 2015

GlycoRDF: an ontology to standardize glycomics data in RDF.
Bioinformatics, 2015

2014
UniCarbKB: building a knowledge platform for glycoproteomics.
Nucleic Acids Research, 2014

WURCS: The Web3 Unique Representation of Carbohydrate Structures.
Journal of Chemical Information and Modeling, 2014

Toolboxes for a standardised and systematic study of glycans.
BMC Bioinformatics, 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
J. Biomedical Semantics, 2014

Frequent glycan structure mining of influenza virus data revealed a sulfated glycan motif that increased viral infection.
Bioinformatics, 2014

2013
Introducing glycomics data into the Semantic Web.
J. Biomedical Semantics, 2013

2012
Modeling genetic regulatory networks: a delay discrete dynamical model approach.
J. Systems Science & Complexity, 2012

The GlycomeAtlas tool for visualizing and querying glycome data.
Bioinformatics, 2012

Multiple Tree Alignment with Weights Applied to Carbohydrates to Extract Binding Recognition Patterns.
Proceedings of the Pattern Recognition in Bioinformatics, 2012

2011
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
J. Biomedical Semantics, 2011

2010
A weighted q-gram method for glycan structure classification.
BMC Bioinformatics, 2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomedical Semantics, 2010

2008
A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology.
TKDD, 2008

An Introduction to Bioinformatics for Glycomics Research.
PLoS Computational Biology, 2008

An Efficient Unordered Tree Kernel and Its Application to Glycan Classification.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2008

2006
From genomics to chemical genomics: new developments in KEGG.
Nucleic Acids Research, 2006

Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules.
Bioinformatics, 2006

A new efficient probabilistic model for mining labeled ordered trees.
Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2006

ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

A 6-Approximation Algorithm for Computing Smallest Common AoN-Supertree with Application to the Reconstruction of Glycan Trees.
Proceedings of the Algorithms and Computation, 17th International Symposium, 2006

2005
A Probabilistic Model for Mining Labeled Ordered Trees: Capturing Patterns in Carbohydrate Sugar Chains.
IEEE Trans. Knowl. Data Eng., 2005

A score matrix to reveal the hidden links in glycans.
Bioinformatics, 2005

Cleaning microarray expression data using Markov random fields based on profile similarity.
Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), 2005

2004
Managing and Analyzing Carbohydrate Data.
SIGMOD Record, 2004

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.
Nucleic Acids Research, 2004

Finding the maximum common subgraph of a partial k-tree and a graph with a polynomially bounded number of spanning trees.
Inf. Process. Lett., 2004

A General Probabilistic Framework for Mining Labeled Ordered Trees.
Proceedings of the Fourth SIAM International Conference on Data Mining, 2004

Application of a new probabilistic model for recognizing complex patterns in glycans.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2001
Towards Web-Based Computing.
Int. J. Comput. Geometry Appl., 2001

2000
A Web-Based Distributed Programming Environment.
Proceedings of the High-Performance Computing and Networking, 8th International Conference, 2000


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