Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma. - Kjong-Van Lehmann; André Kahles; Cyriac Kandoth; William Lee; Nikolaus Schultz; Oliver Stegle; Gunnar Rätsch (Pacific Symposium on Biocomputing, 2015)

Unsupervised Extraction of Phenotypes from Cancer Clinical Notes for Association Studies. - Stefan G. Stark; Stephanie L. Hyland; Melanie Fernandes Pradier; Kjong-Van Lehmann; Andreas Wicki; Fernando Pérez-Cruz; Julia E. Vogt; Gunnar Rätsch (CoRR, 2019)

Mutational signature learning with supervised negative binomial non-negative matrix factorization. - Xinrui Lyu; Jean Garret; Gunnar Rätsch; Kjong-Van Lehmann (Bioinform., 2020)

SCIM: universal single-cell matching with unpaired feature sets. - Stefan G. Stark; Joanna Ficek; Francesco Locatello; Ximena Bonilla; Stéphane Chevrier; Franziska Singer; Tumor Profiler Consortium; Gunnar Rätsch; Kjong-Van Lehmann (Bioinform., 2020)

Genomic basis for RNA alterations in cancer. - Claudia Calabrese; Natalie R. Davidson; Deniz Demircioglu; Nuno A. Fonseca; Yao He; André Kahles; Kjong-Van Lehmann; Fenglin Liu; Yuichi Shiraishi; Cameron M. Soulette; Lara Urban; Liliana Greger; et al. (Nat., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing. - Hana Rozhonová; Daniel Danciu; Stefan Stark; Gunnar Rätsch; André Kahles; Kjong-Van Lehmann (Bioinform., 2022)

RNA Instant Quality Check: Alignment-Free RNA-Degradation Detection. - Kjong-Van Lehmann; André Kahles; Magdalena Murr; Gunnar Rätsch (J. Comput. Biol., 2022)

Probabilistic pathway-based multimodal factor analysis. - Alexander Immer; Stefan G. Stark; Francis Jacob; Ximena Bonilla; Tinu Thomas; André Kahles; Sandra Götze; Emanuela S. Milani; Bernd Wollscheid; Tumor Profiler Consortium; Gunnar Rätsch; Kjong-Van Lehmann (Bioinform., 2024)