A greedy, graph-based algorithm for the alignment of multiple homologous gene lists. - Jan Fostier; Sebastian Proost; Bart Dhoedt; Yvan Saeys; Piet Demeester; Yves Van de Peer; Klaas Vandepoele (Bioinform., 2011)

A Parallel, Distributed-Memory Framework for Comparative Motif Discovery. - Dieter De Witte; Michiel Van Bel; Pieter Audenaert; Piet Demeester; Bart Dhoedt; Klaas Vandepoele; Jan Fostier (PPAM (2), 2013)

MAGIC: access portal to a cross-platform gene expression compendium for maize. - Qiang Fu 009; Ana Carolina Fierro; Pieter Meysman; Aminael Sánchez-Rodríguez; Klaas Vandepoele; Kathleen Marchal; Kristof Engelen (Bioinform., 2014)

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements. - Dieter De Witte; Jan Van de Velde; Dries Decap; Michiel Van Bel; Pieter Audenaert; Piet Demeester; Bart Dhoedt; Klaas Vandepoele; Jan Fostier (Bioinform., 2015)

PLAZA 3.0: an access point for plant comparative genomics. - Sebastian Proost; Michiel Van Bel; Dries Vaneechoutte; Yves Van de Peer; Dirk Inzé; Bernd Mueller-Roeber; Klaas Vandepoele (Nucleic Acids Res., 2015)

An update on LNCipedia: a database for annotated human lncRNA sequences. - Pieter-Jan Volders; Kenneth Verheggen; Gerben Menschaert; Klaas Vandepoele; Lennart Martens; Jo Vandesompele; Pieter Mestdagh (Nucleic Acids Res., 2015)

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization. - Lukasz Kreft; Alexander Botzki; Frederik Coppens; Klaas Vandepoele; Michiel Van Bel (Bioinform., 2017)

Gearing up to handle the mosaic nature of life in the quest for orthologs. - Kristoffer Forslund; Cécile Pereira; Salvador Capella-Gutiérrez; Alan W. Sousa da Silva; Adrian M. Altenhoff; Jaime Huerta-Cepas; Matthieu Muffato; Mateus Patricio; Klaas Vandepoele; Ingo Ebersberger; Judith A. Blake; Jesualdo Tomás Fernández-Breis; et al. (Bioinform., 2018)

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. - Michiel Van Bel; Tim Diels; Emmelien Vancaester; Lukasz Kreft; Alexander Botzki; Yves Van de Peer; Frederik Coppens; Klaas Vandepoele (Nucleic Acids Res., 2018)

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. - Aziz Khan 001; Oriol Fornes; Arnaud Stigliani; Marius Gheorghe; Jaime Abraham Castro-Mondragón; Robin van der Lee; Adrien Bessy; Jeanne Chèneby; Shubhada R. Kulkarni; Ge Tan; Damir Baranasic; David J. Arenillas; et al. (Nucleic Acids Res., 2018)

Curse: building expression atlases and co-expression networks from public RNA-Seq data. - Dries Vaneechoutte; Klaas Vandepoele (Bioinform., 2019)

Comment on 'Hayai-Annotation Plants: an ultrafast and comprehensive functional gene annotation system in plants': the importance of taking the GO graph structure into account. - Michiel Van Bel; Klaas Vandepoele (Bioinform., 2021)

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. - Michiel Van Bel; Francesca Silvestri; Eric M. Weitz; Lukasz Kreft; Alexander Botzki; Frederik Coppens; Klaas Vandepoele (Nucleic Acids Res., 2022)

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. - Jaime Abraham Castro-Mondragón; Rafael Riudavets Puig; Ieva Rauluseviciute; Roza Berhanu lemma; Laura Turchi; Romain Blanc-Mathieu; Jeremy Lucas; Paul Boddie; Aziz Khan 001; Nicolás Manosalva Pérez; Oriol Fornes; Tiffany Y. Leung; et al. (Nucleic Acids Res., 2022)

The Quest for Orthologs orthology benchmark service in 2022. - Yannis Nevers; Tamsin E. M. Jones; Dushyanth Jyothi; Bethan Yates; Meritxell Ferret; Laura Portell-Silva; Laia Codó; Salvatore Cosentino; Marina Marcet-Houben; Anna Vlasova; Laetitia Poidevin; Arnaud Kress; et al. (Nucleic Acids Res., 2022)