ChemicalX: A Deep Learning Library for Drug Pair Scoring. - Benedek Rozemberczki; Charles Tapley Hoyt; Anna Gogleva; Piotr Grabowski; Klas Karis; Andrej Lamov; Andriy Nikolov; Sebastian Nilsson; Michaël Ughetto; Yu Wang 160; Tyler Derr; Benjamin M. Gyori (KDD, 2022)

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. - Rudolf T. Pillich; Jing Chen; Christopher Churas; Dylan Fong; Benjamin M. Gyori; Trey Ideker; Klas Karis; Sophie N. Liu; Keiichiro Ono; Alexander R. Pico; Dexter Pratt (Bioinform., 2023)