Online in silico validation of disease and gene sets, clusterings or subnetworks with DIGEST. - Klaudia Adamowicz; Andreas Maier 009; Jan Baumbach; David B. Blumenthal (Briefings Bioinform., 2022)

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt. - Yuliya Burankova; Miriam Abele; Mohammad Bakhtiari; Christine von Törne; Teresa Barth; Lisa Schweizer; Pieter Giesbertz; Johannes R. Schmidt; Stefan Kalkhof; Janina Müller-Deile; Peter A. van Veelen; Yassene Mohammed; et al. (CoRR, 2024)

Systematic evaluation of normalization approaches in tandem mass tag and label-free protein quantification data using PRONE. - Lis Arend; Klaudia Adamowicz; Johannes R. Schmidt; Yuliya Burankova; Olga I. Zolotareva; Olga Tsoy; Josch Konstantin Pauling; Stefan Kalkhof; Jan Baumbach; Markus List; Tanja Laske (Briefings Bioinform., 2025)