A Statistical Analysis of the success of exon prediction algorithms on the Arabidopsis genome. - Klaus F. X. Mayer; Christine M. Schüller; Larry Parnell (German Conference on Bioinformatics, 1998)

MIPS: a database for genomes and protein sequences. - Hans-Werner Mewes; Klaus Heumann; Andreas Kaps; Klaus F. X. Mayer; Friedhelm Pfeiffer; S. Stocker; Dmitrij Frishman (Nucleic Acids Res., 1999)

Arabidopsis Genome Analysis As Exemplified By Analysis of Chromosome 4. - Klaus F. X. Mayer; Kai Lemcke; Christine M. Schüller; Stephen Rudd; Paolo Zaccaria (Briefings Bioinform., 2000)

Exon discovery by genomic sequence alignment. - Burkhard Morgenstern; Oliver Rinner; Saïd Abdeddaïm; Dirk Haase; Klaus F. X. Mayer; Andreas W. M. Dress; Hans-Werner Mewes (Bioinform., 2002)

MIPS: a database for genomes and protein sequences. - Hans-Werner Mewes; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Klaus F. X. Mayer; Martin Mokrejs; Burkhard Morgenstern; Martin Münsterkötter; Stephen Rudd; B. Weil (Nucleic Acids Res., 2002)

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. - Heiko Schoof; Paolo Zaccaria; Heidrun Gundlach; Kai Lemcke; Stephen Rudd; Grigory Kolesov; Roland Arnold; Hans-Werner Mewes; Klaus F. X. Mayer (Nucleic Acids Res., 2002)

MOsDB: an integrated information resource for rice genomics. - Wojciech M. Karlowski; Heiko Schoof; Vijayalakshmi Janakiraman; Volker Stümpflen; Klaus F. X. Mayer (Nucleic Acids Res., 2003)

Sputnik: a database platform for comparative plant genomics. - Stephen Rudd; Hans-Werner Mewes; Klaus F. X. Mayer (Nucleic Acids Res., 2003)

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics. - Heiko Schoof; Rebecca Ernst; Vladimir Nazarov; Lukas Pfeifer; Hans-Werner Mewes; Klaus F. X. Mayer (Nucleic Acids Res., 2004)

CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences. - Tobias Hindemitt; Klaus F. X. Mayer (Bioinform., 2005)

Gene selection from microarray data for cancer classification - a machine learning approach. - Yu Wang 008; Igor V. Tetko; Mark A. Hall; Eibe Frank; Axel Facius; Klaus F. X. Mayer; Hans-Werner Mewes (Comput. Biol. Chem., 2005)

PlantMarkers - a database of predicted molecular markers from plants. - Stephen Rudd; Heiko Schoof; Klaus F. X. Mayer (Nucleic Acids Res., 2005)

Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs. - Yu Wang 008; Tobias Hindemitt; Klaus F. X. Mayer (Bioinform., 2006)

MIPS: analysis and annotation of proteins from whole genomes in 2005. - Hans-Werner Mewes; Dmitrij Frishman; Klaus F. X. Mayer; Martin Münsterkötter; Octave Noubibou; Philipp Pagel; Thomas Rattei; Matthias Oesterheld; Andreas Ruepp; Volker Stümpflen (Nucleic Acids Res., 2006)

Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana. - Igor V. Tetko; Georg Haberer; Stephen Rudd; Blake C. Meyers; Hans-Werner Mewes; Klaus F. X. Mayer (PLoS Comput. Biol., 2006)

Correction: Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana. - Igor V. Tetko; Georg Haberer; Stephen Rudd; Blake C. Meyers; Hans-Werner Mewes; Klaus F. X. Mayer (PLoS Comput. Biol., 2006)

Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation. - Kathrin Klee; Rebecca Ernst; Manuel Spannagl; Klaus F. X. Mayer (BMC Bioinform., 2007)

MIPSPlantsDB - plant database resource for integrative and comparative plant genome research. - Manuel Spannagl; Octave Noubibou; Dirk Haase; Li Yang; Heidrun Gundlach; Tobias Hindemitt; Kathrin Klee; Georg Haberer; Heiko Schoof; Klaus F. X. Mayer (Nucleic Acids Res., 2007)

MIPS: analysis and annotation of genome information in 2007. - Hans-Werner Mewes; Sabine Dietmann; Dmitrij Frishman; Richard Gregory 003; Gertrud Mannhaupt; Klaus F. X. Mayer; Martin Münsterkötter; Andreas Ruepp; Manuel Spannagl; Volker Stümpflen; Thomas Rattei (Nucleic Acids Res., 2008)

MicroRNAs coordinately regulate protein complexes. - Steffen Sass; Sabine Dietmann; Ulrike C. Burk; Simone Brabletz; Dominik Lutter; Andreas Kowarsch; Klaus F. X. Mayer; Thomas Brabletz; Andreas Ruepp; Fabian J. Theis; Yu Wang 008 (BMC Syst. Biol., 2011)

MIPS: curated databases and comprehensive secondary data resources in 2010. - Hans-Werner Mewes; Andreas Ruepp; Fabian J. Theis; Thomas Rattei; Mathias C. Walter; Dmitrij Frishman; Karsten Suhre; Manuel Spannagl; Klaus F. X. Mayer; Volker Stümpflen; Alexey V. Antonov (Nucleic Acids Res., 2011)

RNASeqExpressionBrowser - a web interface to browse and visualize high-throughput expression data. - Thomas Nussbaumer; Karl G. Kugler; Kai Christian Bader; Sapna Sharma; Michael Seidel; Klaus F. X. Mayer (Bioinform., 2014)

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species. - Svenja Alter; Kai Christian Bader; Manuel Spannagl; Yu Wang 008; Eva Bauer; Chris-Carolin Schön; Klaus F. X. Mayer (Database J. Biol. Databases Curation, 2015)

PGSB PlantsDB: updates to the database framework for comparative plant genome research. - Manuel Spannagl; Thomas Nussbaumer; Kai Christian Bader; Mihaela M. Martis; Michael Seidel; Karl G. Kugler; Heidrun Gundlach; Klaus F. X. Mayer (Nucleic Acids Res., 2016)

Extensive signal integration by the phytohormone protein network. - Melina Altmann; Stefan Altmann; Patricia A. Rodriguez; Benjamin Weller; Lena Elorduy Vergara; Julius Palme; Nora Marín-de la Rosa; Mayra Sauer; Marion Wenig; José Antonio Villaécija-Aguilar; Jennifer Sales; Chung-Wen Lin; et al. (Nat., 2020)