Coordinates and intervals in graph-based reference genomes. - Knut D. Rand; Ivar Grytten; Alexander Johan Nederbragt; Geir Storvik; Ingrid Kristine Glad; Geir Kjetil Sandve (BMC Bioinform., 2017)

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. - Ivar Grytten; Knut D. Rand; Alexander Johan Nederbragt; Geir Storvik; Ingrid Kristine Glad; Geir Kjetil Sandve (PLoS Comput. Biol., 2019)

Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. - Stefania Salvatore; Knut Dagestad Rand; Ivar Grytten; Egil Ferkingstad; Diana Domanska; Lars Holden; Marius Gheorghe; Anthony Mathelier; Ingrid Kristine Glad; Geir Kjetil Sandve (Briefings Bioinform., 2020)

The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. - Milena Pavlovic; Lonneke Scheffer; Keshav Motwani; Chakravarthi Kanduri; Radmila Kompova; Nikolay Vazov; Knut Waagan; Fabian L. M. Bernal; Alexandre Almeida Costa; Brian Corrie; Rahmad Akbar; Ghadi S. Al Hajj; et al. (Nat. Mach. Intell., 2021)

Ten simple rules for quick and dirty scientific programming. - Gabriel Balaban; Ivar Grytten; Knut Dagestad Rand; Lonneke Scheffer; Geir Kjetil Sandve (PLoS Comput. Biol., 2021)

Incorporating probabilistic domain knowledge into deep multiple instance learning. - Ghadi S. Al Hajj; Aliaksandr Hubin; Chakravarthi Kanduri; Milena Pavlovic; Knut Dagestad Rand; Michael Widrich; Anne H. Schistad Solberg; Victor Greiff; Johan Pensar; Günter Klambauer; Geir Kjetil Sandve (ICML, 2024)