A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: Toward the strict alignment of valid fragments across electrophoretic patterns. - Koji Kadota; Ryutaro Fukumura; Joseph J. Rodrigue; Ryoko Araki; Masumi Abe (BMC Bioinform., 2005)

ROKU: a novel method for identification of tissue-specific genes. - Koji Kadota; Jiazhen Ye; Yuji Nakai; Tohru Terada; Kentaro Shimizu (BMC Bioinform., 2006)

GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data. - Koji Kadota; Ryoko Araki; Yuji Nakai; Masumi Abe (Algorithms Mol. Biol., 2007)

A weighted average difference method for detecting differentially expressed genes from microarray data. - Koji Kadota; Yuji Nakai; Kentaro Shimizu (Algorithms Mol. Biol., 2008)

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity. - Koji Kadota; Yuji Nakai; Kentaro Shimizu (Algorithms Mol. Biol., 2009)

Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data. - Koji Kadota; Kentaro Shimizu (BMC Bioinform., 2011)

Stochastic dynamics hidden in Japanese martial arts. - Yuji Yamamoto; Motoki Okumura; Akifumi Kijima; Keiko Yokoyama; Koji Kadota; Hiroo Suzuki; Kazutoshi Gohara (CogSci, 2012)

A normalization strategy for comparing tag count data. - Koji Kadota; Tomoaki Nishiyama; Kentaro Shimizu (Algorithms Mol. Biol., 2012)

Human Motion Analysis under Actual Sports Game Situations - Sequential Multi-decay Motion History Image Matching. - Dan Mikami; Toshitaka Kimura; Koji Kadota; Harumi Kawamura; Akira Kojima (VISAPP (2), 2013)

TCC: an R package for comparing tag count data with robust normalization strategies. - Jianqiang Sun; Tomoaki Nishiyama; Kentaro Shimizu; Koji Kadota (BMC Bioinform., 2013)

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data. - Min Tang; Jianqiang Sun; Kentaro Shimizu; Koji Kadota (BMC Bioinform., 2015)

Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data. - Takayuki Osabe; Kentaro Shimizu; Koji Kadota (BMC Bioinform., 2021)