Probabilistic simulation of human-machine dialogues. - Konrad Scheffler; Steve J. Young (ICASSP, 2000)

Phoneme-based topic spotting on the switchboard corpus. - M. W. Theunissen; Konrad Scheffler; Johan A. du Preez (INTERSPEECH, 2001)

Very Low Power to Detect Asymmetric Divergence of Duplicated Genes. - Cathal Seoighe; Konrad Scheffler (Comparative Genomics, 2005)

Robust inference of positive selection from recombining coding sequences. - Konrad Scheffler; Darren P. Martin; Cathal Seoighe (Bioinform., 2006)

Maximum likelihood inference of imprinting and allele-specific expression from EST data. - Cathal Seoighe; Victoria Nembaware; Konrad Scheffler (Bioinform., 2006)

Models of coding sequence evolution. - Wayne Delport; Konrad Scheffler; Cathal Seoighe (Briefings Bioinform., 2009)

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences. - Wayne Delport; Konrad Scheffler; Gordon Botha; Mike B. Gravenor; Spencer V. Muse; Sergei L. Kosakovsky Pond (PLoS Comput. Biol., 2010)

Workshop: Error correction, noise filtering, and phylogenetic analysis of HIV sequences using the 454 platform. - Konrad Scheffler; N. Lance Hepler; Martin D. Smith; Wayne Delport; Art F. Y. Poon; Douglas D. Richman; Sergei L. Kosakovsky Pond (ICCABS, 2012)

Modeling HIV-1 Drug Resistance as Episodic Directional Selection. - Ben Murrell; Tulio de Oliveira; Chris Seebregts; Sergei L. Kosakovsky Pond; Konrad Scheffler (PLoS Comput. Biol., 2012)

IDEPI: Rapid Prediction of HIV-1 Antibody Epitopes and Other Phenotypic Features from Sequence Data Using a Flexible Machine Learning Platform. - N. Lance Hepler; Konrad Scheffler; Steven Weaver; Ben Murrell; Douglas D. Richman; Dennis R. Burton; Pascal Poignard; Davey M. Smith; Sergei L. Kosakovsky Pond (PLoS Comput. Biol., 2014)

: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial. - Paul Thatcher Edlefsen; Morgane Rolland; Tomer Hertz; Sodsai Tovanabutra; Andrew J. Gartland; Allan C. deCamp; Craig A. Magaret; Hasan Ahmed; Raphael Gottardo; Michal Juraska; Connor McCoy; Brendan B. Larsen; et al. (PLoS Comput. Biol., 2015)

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions. - Egor Dolzhenko; Viraj Deshpande; Felix Schlesinger; Peter Krusche; Roman Petrovski; Sai Chen; Dorothea Emig-Agius; Andrew Gross; Giuseppe Narzisi; Brett Bowman; Konrad Scheffler; Joke J. F. A van Vugt; et al. (Bioinform., 2019)

Extrapolation of System Matrices in Magnetic Particle Imaging. - Konrad Scheffler; Marija Boberg; Tobias Knopp 001 (IEEE Trans. Medical Imaging, 2023)

Equilibrium Model With Anisotropy for Model-Based Reconstruction in Magnetic Particle Imaging. - Marco Maaß; Tobias Kluth; Christine Droigk; Hannes Albers; Konrad Scheffler; Alfred Mertins; Tobias Knopp 001 (IEEE Trans. Computational Imaging, 2024)

Efficient Chebyshev Reconstruction for the Anisotropic Equilibrium Model in Magnetic Particle Imaging. - Christine Droigk; Daniel Hernández Durán; Marco Maaß; Tobias Knopp 001; Konrad Scheffler (CoRR, 2025)