Growing functional modules from a seed protein via integration of protein interaction and gene expression data. - Ioannis A. Maraziotis; Konstantina Dimitrakopoulou; Anastasios Bezerianos (BMC Bioinform., 2007)

An in silico method for detecting overlapping functional modules from composite biological networks. - Ioannis A. Maraziotis; Konstantina Dimitrakopoulou; Anastasios Bezerianos (BMC Syst. Biol., 2008)

Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection. - Konstantina Dimitrakopoulou; Charalampos Tsimpouris; George Papadopoulos; Claudia Pommerenke; Esther Wilk; Kyriakos N. Sgarbas; Klaus Schughart; Anastasios Bezerianos (J. Clin. Bioinform., 2011)

Multi-scale modeling of gene regulatory networks via integration of temporal and topological biological data. - Georgios N. Dimitrakopoulos; Kyriakos N. Sgarbas; Konstantina Dimitrakopoulou; Andrei Dragomir; Anastasios Bezerianos; Ioannis A. Maraziotis (EMBC, 2012)

Revealing the dynamic modularity of composite biological networks in breast cancer treatment. - Konstantina Dimitrakopoulou; Georgios N. Dimitrakopoulos; Evangelia I. Zacharaki; Ioannis A. Maraziotis; Kyriakos N. Sgarbas; Anastasios Bezerianos (EMBC, 2012)

OLYMPUS: An automated hybrid clustering method in time series gene expression. Case study: Host response after Influenza A (H1N1) infection. - Konstantina Dimitrakopoulou; Aristidis G. Vrahatis; Esther Wilk; Athanasios K. Tsakalidis; Anastasios Bezerianos (Comput. Methods Programs Biomed., 2013)

Supervised method for construction of microRNA-mRNA networks: Application in cardiac tissue aging dataset. - Georgios N. Dimitrakopoulos; Konstantina Dimitrakopoulou; Ioannis A. Maraziotis; Kyriakos N. Sgarbas; Anastasios Bezerianos (EMBC, 2014)

CHRONOS: a time-varying method for microRNA-mediated subpathway enrichment analysis. - Aristidis G. Vrahatis; Konstantina Dimitrakopoulou; Panos Balomenos; Athanasios K. Tsakalidis; Anastasios Bezerianos (Bioinform., 2016)

Detecting Perturbed Subpathways towards Mouse Lung Regeneration Following H1N1 Influenza Infection. - Aristidis G. Vrahatis; Konstantina Dimitrakopoulou; Andreas Kanavos; Spyros Sioutas; Athanasios K. Tsakalidis (Comput., 2017)

Deblender: a semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples. - Konstantina Dimitrakopoulou; Elisabeth Wik; Lars A. Akslen; Inge Jonassen (BMC Bioinform., 2018)