RBR: library-less repeat detection for ESTs. - Ketil Malde; Korbinian Schneeberger; Eivind Coward; Inge Jonassen (Bioinform., 2006)

Optimal spliced alignments of short sequence reads. - Fabio De Bona; Stephan Ossowski; Korbinian Schneeberger; Gunnar Rätsch (BMC Bioinform., 2008)

findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. - Hequan Sun; Jia Ding; Mathieu Piednoël; Korbinian Schneeberger (Bioinform., 2018)

The Longest Run Subsequence Problem. - Sven Schrinner; Manish Goel; Michael Wulfert; Philipp Spohr; Korbinian Schneeberger; Gunnar W. Klau (WABI, 2020)

Using the longest run subsequence problem within homology-based scaffolding. - Sven Schrinner; Manish Goel; Michael Wulfert; Philipp Spohr; Korbinian Schneeberger; Gunnar W. Klau (Algorithms Mol. Biol., 2021)

plotsr: visualizing structural similarities and rearrangements between multiple genomes. - Manish Goel; Korbinian Schneeberger (Bioinform., 2022)