TRANSFAC Retrieval Program: A Network Model Database of Eukaryotic Transcription Regulating Sequences and Proteins. - Rainer Knüppel; P. Dietze; W. Lehnberg; Kornelie Frech; Edgar Wingender (J. Comput. Biol., 1994)

Specific LTR Model Detected Transcriptionally Active Match in Sequence Database. - Kornelie Frech; Joana Danescu; Thomas Werner (German Conference on Bioinformatics, 1996)

A New Method to Develop Highly Specific Models for Regulatory DNA-Regions. - Kornelie Frech; Kerstin Quandt; Thomas Werner (German Conference on Bioinformatics - Selected Papers, 1996)

Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm. - Franz Wolfertstetter; Kornelie Frech; Grit Herrmann; Thomas Werner (Comput. Appl. Biosci., 1996)

ConsInspector 3.0: new library and enhanced functionality. - Kornelie Frech; P. Dietze; Thomas Werner (Comput. Appl. Biosci., 1997)

Software for the analysis of DNA sequence elements of transcription. - Kornelie Frech; Kerstin Quandt; Thomas Werner (Comput. Appl. Biosci., 1997)

Modular modeling correlates with functional promoter diversification of human MHC class I promoters although nucleotide sequence conservation is not correlated. - Thomas Werner; Andreas Klingenhoff; Kornelie Frech; Kerstin Quandt (German Conference on Bioinformatics, 1998)

DIALIGN: finding local similarities by multiple sequence alignment. - Burkhard Morgenstern; Kornelie Frech; Andreas W. M. Dress; Thomas Werner (Bioinform., 1998)

Muscle actin genes: A first step towards computational classification of tissue specific promoters. - Kornelie Frech; Kerstin Quandt; Thomas Werner (Silico Biol., 1998)

Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity. - Andreas Klingenhoff; Kornelie Frech; Kerstin Quandt; Thomas Werner (Bioinform., 1999)

A New Tool for the in Silico Prediction of Matrix Attachment Regions in Large Genomic Sequences. - Matthias Frisch; Kornelie Frech; Andreas Klingenhoff; Kerstin Quandt; Ines Liebich; Thomas Werner (German Conference on Bioinformatics, 2000)

Regulatory modules shared within gene classes as well as across gene classes can be detected by the same in silico approach. - Andreas Klingenhoff; Kornelie Frech; Thomas Werner (Silico Biol., 2000)

MatInspector and beyond: promoter analysis based on transcription factor binding sites. - K. Cartharius; Kornelie Frech; Korbinian Grote; Bernward Klocke; Manuela Haltmeier; Andreas Klingenhoff; Matthias Frisch; M. Bayerlein; Thomas Werner (Bioinform., 2005)

LitInspector: literature and signal transduction pathway mining in PubMed abstracts. - Matthias Frisch; Bernward Klocke; Manuela Haltmeier; Kornelie Frech (Nucleic Acids Res., 2009)