Dendritic Calcium Regulates Synaptic Plasticity in Insect Nervous System. - Kotaro Oka; Yoshichika Baba; Hiroto Ogawa (ICONIP, 1998)

Kinetic simulation of signal transduction system in hippocampal long-term potentiation with dynamic modeling of protein phosphatase 2A. - Shinichi Kikuchi; Kenji Fujimoto; Noriyuki Kitagawa; Taro Fuchikawa; Michiko Abe; Kotaro Oka; Kohtaro Takei; Masaru Tomita (Neural Networks, 2003)

Algebraic Method for the Analysis of Signaling Crosstalk. - Yoshiya Matsubara; Shinichi Kikuchi; Masahiro Sugimoto; Kotaro Oka; Masaru Tomita (Artif. Life, 2008)

Network features and pathway analyses of a signal transduction cascade. - Ryoji Yanashima; Noriyuki Kitagawa; Yoshiya Matsubara; Robert Weatheritt; Kotaro Oka; Shinichi Kikuchi; Masaru Tomita; Shun Ishizaki (Frontiers Neuroinformatics, 2009)

From Microscopy Data to in silico Environments for in vivo Oriented Simulations. - Noriko Hiroi; Michael Klann; Keisuke Iba; Pablo de Heras Ciechomski; Shuji Yamashita; Akito Tabira; Takahiro Okuhara; Takeshi Kubojima; Yasunori Okada; Kotaro Oka; Robin Mange; Michael Unger; et al. (EURASIP J. Bioinform. Syst. Biol., 2012)

In vivo oriented modeling with consideration of intracellular crowding. - Noriko Hiroi; Keisuke Iba; Akito Tabira; Takahiro Okuhara; Takeshi Kubojima; Takumi Hiraiwa; Tetsuya J. Kobayashi; Kotaro Oka; Akira Funahashi (EMBC, 2013)