Discriminant analysis of promoter regions in Escherichia coli sequences. - Kotoko Nakata; Minoru Kanehisa; Jacob V. Maizel (Comput. Appl. Biosci., 1988)

Prediction of zinc finger DNA binding protein. - Kotoko Nakata (Comput. Appl. Biosci., 1995)

Development of the receptor database (RDB): application to the endocrine disruptor problem. - Kotoko Nakata; T. Takai; Tsuguchika Kaminuma (Bioinform., 1999)

An Integrated Receptor Database (IRDB). - Kotoko Nakata; Takako Takai-Igarashi; Tatsuya Nakano; Tsuguchika Kaminuma (Data Sci. J., 2002)

Development of KiBank, a database supporting structure-based drug design. - Junwei Zhang; Masahiro Aizawa; Shinji Amari; Yoshio Iwasawa; Tatsuya Nakano; Kotoko Nakata (Comput. Biol. Chem., 2004)

Ab initio quantum mechanical study of the binding energies of human estrogen receptor with its ligands: An application of fragment molecular orbital method. - Kaori Fukuzawa; Kazuo Kitaura; Masami Uebayasi; Kotoko Nakata; Tsuguchika Kaminuma; Tatsuya Nakano (J. Comput. Chem., 2005)

VISCANA: Visualized Cluster Analysis of Protein-Ligand Interaction Based on the ab Initio Fragment Molecular Orbital Method for Virtual Ligand Screening. - Shinji Amari; Masahiro Aizawa; Junwei Zhang; Kaori Fukuzawa; Yuji Mochizuki; Yoshio Iwasawa; Kotoko Nakata; Hiroshi Chuman; Tatsuya Nakano (J. Chem. Inf. Model., 2006)