A New Path Based Hybrid Measurefor Gene Ontology Similarity. - Sanghamitra Bandyopadhyay; Koushik Mallick (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

A New Feature Vector Based on Gene Ontology Terms for Protein-Protein Interaction Prediction. - Sanghamitra Bandyopadhyay; Koushik Mallick (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Topo2Vec: A Novel Node Embedding Generation Based on Network Topology for Link Prediction. - Koushik Mallick; Sanghamitra Bandyopadhyay; Subhasis Chakraborty; Rounaq Choudhuri; Sayan Bose (IEEE Trans. Comput. Soc. Syst., 2019)

A Novel Graph Topology-Based GO-Similarity Measure for Signature Detection From Multi-Omics Data and its Application to Other Problems. - Koushik Mallick; Saurav Mallik; Sanghamitra Bandyopadhyay; Sikim Chakraborty (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

A scalable unsupervised learning of scRNAseq data detects rare cells through integration of structure-preserving embedding, clustering and outlier detection. - Koushik Mallick; Sikim Chakraborty; Saurav Mallik; Sanghamitra Bandyopadhyay (Briefings Bioinform., 2023)