Quintet Rooting: rooting species trees under the multi-species coalescent model. - Yasamin Tabatabaee; Kowshika Sarker; Tandy J. Warnow (Bioinform., 2022)

Augmenting nutritional metabolomics with a genome-scale metabolic model for assessment of diet intake. - Kowshika Sarker; Ruoqing Zhu; Hannah D. Holscher; ChengXiang Zhai (BCB, 2023)

Prior-guided longitudinal metabolomic analysis. - Kowshika Sarker; Ruoqing Zhu; Hannah Diane Holscher; ChengXiang Zhai (BIBM, 2024)