Site-Specific Recombination Modeled as a Band Surgery: Applications to Xer Recombination. - Kai Ishihara; Koya Shimokawa; Mariel Vázquez (Discrete and Topological Models in Molecular Biology, 2014)

Band surgeries and crossing changes between fibered links. - Dorothy Buck; Kai Ishihara; Matt Rathbun; Koya Shimokawa (J. Lond. Math. Soc., 2016)

On the Classification of Polyhedral Links. - Naohiro Wakayama; Koya Shimokawa (Symmetry, 2022)