An Object-Oriented Library for 3D PET Reconstruction Using Parallel Computing. - Claire Labbé; Kris Thielemans; D. Belluzzo; Valentino Bettinardi; Maria Carla Gilardi; D. S. Hague; Matthew W. Jacobson; S. Kaiser; Roni Levkovitz; T. Margalit; Gautam Mitra; Christian Morel; et al. (Bildverarbeitung für die Medizin, 1999)

Object dependency of resolution in reconstruction algorithms with interiteration filtering applied to PET data. - Sanida Mustafovic; Kris Thielemans (IEEE Trans. Medical Imaging, 2004)

Motion compensated image reconstruction of respiratory gated PET/CT. - Ravindra M. Manjeshwar; Xiaodong Tao; Evren Asma; Kris Thielemans (ISBI, 2006)

A Framework for Automated Tumor Detection in Thoracic FDG PET Images Using Texture-Based Features. - Vijaya Saradhi Gannavaram; Girish Gopalakrishnan; Arunabha Roy; Rakesh Mullick; Ravi Manjeshwar; Kris Thielemans; Uday Patil (ISBI, 2009)

Convergence optimization of parametric MLEM reconstruction for estimation of Patlak plot parameters. - Georgios I. Angelis; Kris Thielemans; Andri C. Tziortzi; Federico E. Turkheimer; Charalampos Tsoumpas (Comput. Medical Imaging Graph., 2011)

Quantitatively accurate image reconstruction for clinical whole-body PET imaging. - Evren Asma; Sangtae Ahn; Hua Qian; Girishankar Gopalakrishnan; Kris Thielemans; Steven G. Ross; Ravindra M. Manjeshwar; Alexander Ganin (APSIPA, 2012)

Joint Parametric Reconstruction and Motion Correction Framework for Dynamic PET Data. - Jieqing Jiao; Alexandre Bousse; Kris Thielemans; Pawel Markiewicz; Ninon Burgos; David Atkinson; Simon R. Arridge; Brian F. Hutton; Sébastien Ourselin (MICCAI (1), 2014)

Attenuation Correction Synthesis for Hybrid PET-MR Scanners: Application to Brain Studies. - Ninon Burgos; Manuel Jorge Cardoso; Kris Thielemans; Marc Modat; Stefano Pedemonte; John C. Dickson; Anna Barnes; Rebekah Ahmed; Colin J. Mahoney; Jonathan M. Schott; John S. Duncan; David Atkinson; et al. (IEEE Trans. Medical Imaging, 2014)

Including Anatomical and Functional Information in MC Simulation of PET and SPECT Brain Studies. Brain-VISET: A Voxel-Based Iterative Method. - Berta Martí Fuster; Oscar Esteban; Kris Thielemans; Xavier Setoain; Andrés Santos; Domènec Ros; Javier Pavía (IEEE Trans. Medical Imaging, 2014)

Practical PET respiratory motion correction in clinical simultaneous PET/MR. - Richard Manber; David Atkinson; Kris Thielemans; Brian F. Hutton; Anna Barnes; Celia O'Meara; Simon Wan; Sébastien Ourselin; Simon R. Arridge (ISBI, 2015)

Maximum-Likelihood Joint Image Reconstruction/Motion Estimation in Attenuation-Corrected Respiratory Gated PET/CT Using a Single Attenuation Map. - Alexandre Bousse; Ottavia Bertolli; David Atkinson; Simon R. Arridge; Sébastien Ourselin; Brian F. Hutton; Kris Thielemans (IEEE Trans. Medical Imaging, 2016)

PET Reconstruction With an Anatomical MRI Prior Using Parallel Level Sets. - Matthias J. Ehrhardt; Pawel Markiewicz; Maria Liljeroth; Anna Barnes; Ville Kolehmainen; John S. Duncan; Luis Pizarro; David Atkinson; Brian F. Hutton; Sébastien Ourselin; Kris Thielemans; Simon R. Arridge (IEEE Trans. Medical Imaging, 2016)

Direct Parametric Reconstruction With Joint Motion Estimation/Correction for Dynamic Brain PET Data. - Jieqing Jiao; Alexandre Bousse; Kris Thielemans; Ninon Burgos; Philip S. J. Weston; Jonathan M. Schott; David Atkinson; Simon R. Arridge; Brian F. Hutton; Pawel Markiewicz; Sébastien Ourselin (IEEE Trans. Medical Imaging, 2017)

Deep Boosted Regression for MR to CT Synthesis. - Kerstin Kläser 002; Pawel Markiewicz; Marta Bianca Maria Ranzini; Wenqi Li 001; Marc Modat; Brian F. Hutton; David Atkinson; Kris Thielemans; M. Jorge Cardoso; Sébastien Ourselin (SASHIMI@MICCAI, 2018)

Fast Quasi-Newton Algorithms for Penalized Reconstruction in Emission Tomography and Further Improvements via Preconditioning. - Yu-Jung Tsai; Alexandre Bousse; Matthias J. Ehrhardt; Charles W. Stearns; Sangtae Ahn; Brian F. Hutton; Simon R. Arridge; Kris Thielemans (IEEE Trans. Medical Imaging, 2018)

Improved MR to CT Synthesis for PET/MR Attenuation Correction Using Imitation Learning. - Kerstin Kläser 002; Thomas Varsavsky; Pawel Markiewicz; Tom Vercauteren; David Atkinson; Kris Thielemans; Brian F. Hutton; M. Jorge Cardoso; Sébastien Ourselin (SASHIMI@MICCAI, 2019)

Uncertainty-Aware Multi-resolution Whole-Body MR to CT Synthesis. - Kerstin Kläser 002; Pedro Borges; Richard Shaw; Marta Ranzini; Marc Modat; David Atkinson; Kris Thielemans; Brian F. Hutton; Vicky Goh; Gary J. Cook; M. Jorge Cardoso; Sébastien Ourselin (SASHIMI@MICCAI, 2020)

SIRF: Synergistic Image Reconstruction Framework. - Evgueni Ovtchinnikov; Richard Brown 004; Christoph Kolbitsch; Edoardo Pasca; Casper O. da Costa-Luis; Ashley Gillman; Benjamin A. Thomas; Nikos Efthimiou; Johannes Mayer; Palak Wadhwa; Matthias J. Ehrhardt; Sam Ellis; et al. (Comput. Phys. Commun., 2020)

PET Reconstruction With Non-Negativity Constraint in Projection Space: Optimization Through Hypo-Convergence. - Alexandre Bousse; Matias Courdurier; Élise Émond; Kris Thielemans; Brian F. Hutton; Pablo Irarrazaval; Dimitris Visvikis (IEEE Trans. Medical Imaging, 2020)

Benefits of Using a Spatially-Variant Penalty Strength With Anatomical Priors in PET Reconstruction. - Yu-Jung Tsai; Georg Schramm; Sangtae Ahn; Alexandre Bousse; Simon R. Arridge; Johan Nuyts; Brian F. Hutton; Charles W. Stearns; Kris Thielemans (IEEE Trans. Medical Imaging, 2020)

Core Imaging Library - Part I: a versatile Python framework for tomographic imaging. - Jakob Sauer Jørgensen; Evelina Ametova; Genoveva Burca; Gemma Fardell; Evangelos Papoutsellis; Edoardo Pasca; Kris Thielemans; Martin J. Turner; Ryan Warr; William R. B. Lionheart; Philip J. Withers (CoRR, 2021)

Stochastic EM methods with Variance Reduction for Penalised PET Reconstructions. - Zeljko Kereta; Robert Twyman; Simon R. Arridge; Kris Thielemans; Bangti Jin (CoRR, 2021)

Artificial Intelligence in PET: an Industry Perspective. - Arkadiusz Sitek; Sangtae Ahn; Evren Asma; Adam Chandler; Alvin Ihsani; Sven Prevrhal; Arman Rahmim; Babak Saboury; Kris Thielemans (CoRR, 2021)

Imitation learning for improved 3D PET/MR attenuation correction. - Kerstin Kläser 002; Thomas Varsavsky; Pawel Markiewicz; Tom Vercauteren; Alexander Hammers; David Atkinson; Kris Thielemans; Brian F. Hutton; Manuel Jorge Cardoso; Sébastien Ourselin (Medical Image Anal., 2021)

Validation of a combined image derived input function and venous sampling approach for the quantification of [18F]GE-179 PET binding in the brain. - Marian Galovic; Kjell Erlandsson; Tim D. Fryer; Young T. Hong; Roido Manavaki; Hasan Sari; Sarah Chetcuti; Benjamin A. Thomas; Martin Fisher; Selena Sephton; Roberto Canales; Joseph J. Russell; et al. (NeuroImage, 2021)

Uncertainty analysis of MR-PET image registration for precision neuro-PET imaging. - Pawel J. Markiewicz; Julian C. Matthews; John Ashburner; David M. Cash; David L. Thomas; Enrico De Vita; Anna Barnes; M. Jorge Cardoso; Marc Modat; Richard Brown 004; Kris Thielemans; Casper O. da Costa-Luis; et al. (NeuroImage, 2021)

Evaluation of STIR Library Adapted for PET Scanners with Non-Cylindrical Geometry. - Viet Dao; Ekaterina Mikhaylova; Max L. Ahnen; Jannis Fischer; Kris Thielemans; Charalampos Tsoumpas (J. Imaging, 2022)

Surrogate-Driven Motion Model for Motion Compensated Cone-beam CT Reconstruction using Unsorted Projection Data. - Yuliang Huang; Kris Thielemans; Jamie R. McClelland (ISBI, 2023)

Score-Based Generative Models for PET Image Reconstruction. - Imraj RD Singh; Alexander Denker; Riccardo Barbano; Zeljko Kereta; Bangti Jin; Kris Thielemans; Peter Maass; Simon R. Arridge (CoRR, 2023)

An Investigation of Stochastic Variance Reduction Algorithms for Relative Difference Penalized 3D PET Image Reconstruction. - Robert Twyman; Simon R. Arridge; Zeljko Kereta; Bangti Jin; Ludovica Brusaferri; Sangtae Ahn; Charles W. Stearns; Brian F. Hutton; Irene A. Burger; Fotis Kotasidis; Kris Thielemans (IEEE Trans. Medical Imaging, 2023)

Attenuation Correction Using Template PET Registration for Brain PET: A Proof-of-Concept Study. - Markus Jehl; Ekaterina Mikhaylova; Valerie Treyer; Marlena Hofbauer; Martin Hüllner; Philipp A. Kaufmann; Alfred Buck; Geoff Warnock; Viet Dao; Charalampos Tsoumpas; Daniel Deidda; Kris Thielemans; et al. (J. Imaging, 2023)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

Resolving Variable Respiratory Motion From Unsorted 4D Computed Tomography. - Yuliang Huang; Björn Eiben; Kris Thielemans; Jamie R. McClelland (MICCAI (1), 2024)

Stochastic Optimisation Framework using the Core Imaging Library and Synergistic Image Reconstruction Framework for PET Reconstruction. - Evangelos Papoutsellis; Casper O. da Costa-Luis; Daniel Deidda; Claire Delplancke; Margaret Duff; Gemma Fardell; Ashley Gillman; Jakob S. Jørgensen; Zeljko Kereta; Evgueni Ovtchinnikov; Edoardo Pasca; Georg Schramm; et al. (CoRR, 2024)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)

DIGS: Dynamic CBCT Reconstruction using Deformation-Informed 4D Gaussian Splatting and a Low-Rank Free-Form Deformation Model. - Yuliang Huang; Imraj RD Singh; Thomas Joyce; Kris Thielemans; Jamie R. McClelland (CoRR, 2025)