RegScan: a GWAS tool for quick estimation of allele effects on continuous traits and their combinations. - Toomas Haller; Mart Kals; Tõnu Esko; Reedik Mägi; Krista Fischer (Briefings Bioinform., 2015)

MARV: a tool for genome-wide multi-phenotype analysis of rare variants. - Marika Kaakinen; Reedik Mägi; Krista Fischer; Jani Heikkinen; Marjo-Riitta Järvelin; Andrew P. Morris; Inga Prokopenko (BMC Bioinform., 2017)

SCOPA and META-SCOPA: software for the analysis and aggregation of genome-wide association studies of multiple correlated phenotypes. - Reedik Mägi; Yury V. Suleimanov; Geraldine M. Clarke; Marika Kaakinen; Krista Fischer; Inga Prokopenko; Andrew P. Morris (BMC Bioinform., 2017)

PAIRUP-MS: Pathway analysis and imputation to relate unknowns in profiles from mass spectrometry-based metabolite data. - Yuan-Hao Hsu; Claire Churchhouse; Tune H. Pers; Josep M. Mercader; Andres Metspalu; Krista Fischer; Kristen Fortney; Eric K. Morgen; Clicerio Gonzalez; Maria E. Gonzalez; Tõnu Esko; Joel Hirschhorn (PLoS Comput. Biol., 2019)