The SBASE protein domain library, release 5.0: a collection of annotated protein sequence segments. - Péter Fábián; János Murvai; Zsolt Hátsági; Kristian Vlahovicek; Hedvig Hegyi; Sándor Pongor (Nucleic Acids Res., 1997)

The domain-server: direct prediction of protein domain-homologies from BLAST search. - János Murvai; Kristian Vlahovicek; Endre Barta; Subbiah Parthasarathy; Hedvig Hegyi; Friedhelm Pfeiffer; Sándor Pongor (Bioinform., 1999)

The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segments. - János Murvai; Kristian Vlahovicek; Endre Barta; Csaba Szepesvári; Cristina Acatrinei; Sándor Pongor (Nucleic Acids Res., 1999)

A simple probabilistic scoring method for protein domain identification. - János Murvai; Kristian Vlahovicek; Sándor Pongor (Bioinform., 2000)

model.it : building three dimensional DNA models from sequence data. - Kristian Vlahovicek; Sándor Pongor (Bioinform., 2000)

The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments. - János Murvai; Kristian Vlahovicek; Endre Barta; Bruno Cataletto; Sándor Pongor (Nucleic Acids Res., 2000)

The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments. - János Murvai; Kristian Vlahovicek; Endre Barta; Sándor Pongor (Nucleic Acids Res., 2001)

The SBASE protein domain library, release 9.0: an online resource for protein domain identification. - Kristian Vlahovicek; János Murvai; Endre Barta; Sándor Pongor (Nucleic Acids Res., 2002)

The SBASE domain sequence library, release 10: domain architecture prediction. - Kristian Vlahovicek; László Kaján; János Murvai; Zoltán Hegeds; Sándor Pongor (Nucleic Acids Res., 2003)

DNA analysis servers: plot.it, bend.it, model.it and IS. - Kristian Vlahovicek; László Kaján; Sándor Pongor (Nucleic Acids Res., 2003)

INCA: synonymous codon usage analysis and clustering by means of self-organizing map. - Fran Supek; Kristian Vlahovicek (Bioinform., 2004)

Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm. - Zoltán Gáspári; Kristian Vlahovicek; Sándor Pongor (Bioinform., 2005)

Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity. - Fran Supek; Kristian Vlahovicek (BMC Bioinform., 2005)

The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines. - Kristian Vlahovicek; László Kaján; Vilmos Ágoston; Sándor Pongor (Nucleic Acids Res., 2005)

CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures. - Kristian Vlahovicek; Alessandro Pintar; Laavanya Parthasarathi; Oliviero Carugo; Sándor Pongor (Nucleic Acids Res., 2005)

MADNet: microarray database network web server. - Igor Segota; Nenad Bartonicek; Kristian Vlahovicek (Nucleic Acids Res., 2008)

Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests. - Mile Sikic; Sanja Tomic; Kristian Vlahovicek (PLoS Comput. Biol., 2009)

Correction: Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity. - Fran Supek; Kristian Vlahovicek (BMC Bioinform., 2010)

genomation: a toolkit to summarize, annotate and visualize genomic intervals. - Altuna Akalin; Vedran Franke; Kristian Vlahovicek; Christopher E. Mason; Dirk Schübeler (Bioinform., 2015)

A data-supported history of bioinformatics tools. - Clément Levin; Emeric Dynomant; Bruno J. Gonzalez; Laurent Mouchard; David Landsman; Eivind Hovig; Kristian Vlahovicek (CoRR, 2018)