BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data. - Kristiina Ausmees; Aji John; Salman Zubair Toor; Andreas Hellander; Carl Nettelblad (BMC Bioinform., 2018)

SWEEP: Accelerating Scientific Research Through Scalable Serverless Workflows. - Aji John; Kristiina Ausmees; Kathleen Muenzen; Catherine Kuhn; Amanda Tan (UCC Companion, 2019)

A joint use of pooling and imputation for genotyping SNPs. - Camille Clouard; Kristiina Ausmees; Carl Nettelblad (BMC Bioinform., 2022)

Methodology and Infrastructure for Statistical Computing in Genomics : Applications for Ancient DNA. - Kristiina Ausmees (2022)

Achieving improved accuracy for imputation of ancient DNA. - Kristiina Ausmees; Carl Nettelblad (Bioinform., 2023)

AMLgentex: Mobilizing Data-Driven Research to Combat Money Laundering. - Johan Östman; Edvin Callisen; Anton Chen; Kristiina Ausmees; Emanuel Gårdh; Jovan Zamac; Jolanta Goldsteine; Hugo Wefer; Simon Whelan; Markus Reimegård (CoRR, 2025)