RNAiDB and PhenoBlast: web tools for genome-wide phenotypic mapping projects. - Kristin C. Gunsalus; Wan-Chen Yueh; Philip MacMenamin; Fabio Piano (Nucleic Acids Res., 2004)

microRNA Target Predictions across Seven Drosophila Species and Comparison to Mammalian Targets. - Dominic Grün; Yi-Lu Wang; David Langenberger; Kristin C. Gunsalus; Nikolaus Rajewsky (PLoS Comput. Biol., 2005)

UTRome.org: a platform for 3'UTR biology in C. elegans. - Marco Mangone; Philip MacMenamin; Charles Zegar; Fabio Piano; Kristin C. Gunsalus (Nucleic Acids Res., 2008)

Rapid and accurate developmental stage recognition of C. elegans from high-throughput image data. - Amelia G. White; Patricia G. Cipriani; Huey-Ling Kao; Brandon Lees; Davi Geiger; Eduardo D. Sontag; Kristin C. Gunsalus; Fabio Piano (CVPR, 2010)

MINE: Module Identification in NEtworks. - Kahn Rhrissorrakrai; Kristin C. Gunsalus (BMC Bioinform., 2011)

Wavelet-based Circular Hough Transform and Its Application in Embryo Development Analysis. - Marcelo Cicconet; Davi Geiger; Kristin C. Gunsalus (VISAPP (1), 2013)

DevStaR: High-Throughput Quantification of C. elegans Developmental Stages. - Amelia G. White; Brandon Lees; Huey-Ling Kao; Patricia Giselle Cipriani; Eliana Munarriz; Annalise B. Paaby; Katherine Erickson; Sherly Guzman; Kirk Rattanakorn; Eduardo D. Sontag; Davi Geiger; Kristin C. Gunsalus; et al. (IEEE Trans. Medical Imaging, 2013)

Mirror Symmetry Histograms for Capturing Geometric Properties in Images. - Marcelo Cicconet; Davi Geiger; Kristin C. Gunsalus; Michael Werman (CVPR, 2014)

Shape statistics for cell division detection in time-lapse videos of early mouse embryo. - Marcelo Cicconet; Kristin C. Gunsalus; Davi Geiger; Michael Werman (ICIP, 2014)

Ellipses from triangles. - Marcelo Cicconet; Kristin C. Gunsalus; Davi Geiger; Michael Werman (ICIP, 2014)

Label free cell-tracking and division detection based on 2D time-lapse images for lineage analysis of early embryo development. - Marcelo Cicconet; Michelle Gutwein; Kristin C. Gunsalus; Davi Geiger (Comput. Biol. Medicine, 2014)

Erratum to: MINE: Module Identification in Networks. - Kahn Rhrissorrakrai; Kristin C. Gunsalus (BMC Bioinform., 2016)

NASQAR: a web-based platform for high-throughput sequencing data analysis and visualization. - Ayman Yousif; Nizar Drou; Jillian Rowe; Mohammed Khalfan; Kristin C. Gunsalus (BMC Bioinform., 2020)

Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing. - Lior Galanti; Dennis E. Shasha; Kristin C. Gunsalus (BMC Bioinform., 2021)