MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles. - Matteo Tiberti; Thilde Terkelsen; Kristine Degn; Ludovica Beltrame; Tycho Canter Cremers; Isabelle da Piedade; Miriam Di Marco; Emiliano Maiani; Elena Papaleo (Briefings Bioinform., 2022)

PDBminer to Find and Annotate Protein Structures for Computational Analysis. - Kristine Degn; Ludovica Beltrame; Matteo Tiberti; Elena Papaleo (J. Chem. Inf. Model., 2023)

Prediction of cancer driver genes and mutations: the potential of integrative computational frameworks. - Mona Nourbakhsh; Kristine Degn; Astrid Saksager; Matteo Tiberti; Elena Papaleo (Briefings Bioinform., 2024)