MARAN: Normalizing Micro-array Data. - Kristof Engelen; Bert Coessens; Kathleen Marchal; Bart De Moor (Bioinform., 2003)

INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis. - Bert Coessens; Gert Thijs; Stein Aerts; Kathleen Marchal; Frank De Smet; Kristof Engelen; Patrick Glenisson; Yves Moreau; Janick Mathys; Bart De Moor (Nucleic Acids Res., 2003)

Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data. - Tijl De Bie; Patrick Monsieurs; Kristof Engelen; Bart De Moor; Nello Cristianini; Kathleen Marchal (Pacific Symposium on Biocomputing, 2005)

A calibration method for estimating absolute expression levels from microarray data. - Kristof Engelen; Bart Naudts; Bart De Moor; Kathleen Marchal (Bioinform., 2006)

CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data. - Hui Zhao; Kristof Engelen; Bart De Moor; Kathleen Marchal (Bioinform., 2007)

Joint mapping of genes and conditions via multidimensional unfolding analysis. - Katrijn Van Deun; Kathleen Marchal; Willem J. Heiser; Kristof Engelen; Iven Van Mechelen (BMC Bioinform., 2007)

Evaluation of time profile reconstruction from complex two-color microarray designs. - Ana Carolina Fierro; Raphael Thuret; Kristof Engelen; Gilles Bernot; Kathleen Marchal; Nicolas Pollet (BMC Bioinform., 2008)

The Use of Mixed Models to Identify Differentially Expressed Genes when a Single Replicate per Biological Condition is Present. - Pushpike Jayantha Thilakarathne; Geert Verbeke; Kristof Engelen; Kathleen Marchal (BIOCOMP, 2009)

Layout and Post-Processing of Transcriptional Modules. - Hong Sun 002; Tim Van den Bulcke; Bart De Moor; Karen Lemmens; Kristof Engelen; Kathleen Marchal (IJCBS, 2009)

ViTraM: visualization of transcriptional modules. - Hong Sun 002; Karen Lemmens; Tim Van den Bulcke; Kristof Engelen; Bart De Moor; Kathleen Marchal (Bioinform., 2009)

Query-based biclustering of gene expression data using Probabilistic Relational Models. - Hui Zhao; Lore Cloots; Tim Van den Bulcke; Yan Wu; Riet De Smet; Valerie Storms; Pieter Meysman; Kristof Engelen; Kathleen Marchal (BMC Bioinform., 2011)

Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli. - Pieter Meysman; Thanh Hai Dang; Kris Laukens; Riet De Smet; Yan Wu; Kathleen Marchal; Kristof Engelen (Nucleic Acids Res., 2011)

Identifying differentially expressed genes in the absence of replication. - Pushpike Jayantha Thilakarathne; Geert Verbeke; Kristof Engelen; Kathleen Marchal; Dan Lin 004 (Int. J. Bioinform. Res. Appl., 2013)

MAGIC: access portal to a cross-platform gene expression compendium for maize. - Qiang Fu 009; Ana Carolina Fierro; Pieter Meysman; Aminael Sánchez-Rodríguez; Klaas Vandepoele; Kathleen Marchal; Kristof Engelen (Bioinform., 2014)

COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia. - Pieter Meysman; Paolo Sonego; Luca Bianco; Qiang Fu 009; Daniela Ledezma-Tejeida; Socorro Gama-Castro; Veerle Liebens; Jan Michiels; Kris Laukens; Kathleen Marchal; Julio Collado-Vides; Kristof Engelen (Nucleic Acids Res., 2014)

Discovering Candidates for Gene Network Expansion by Distributed Volunteer Computing. - Francesco Asnicar; Luca Erculiani; Francesca Galante; Caterina Gallo; Luca Masera; Paolo Morettin; Nadir Sella; Stanislau Semeniuta; Thomas Tolio; Giulia Malacarne; Kristof Engelen; Andrea Argentini; et al. (TrustCom/BigDataSE/ISPA (3), 2015)

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome. - Marco Galardini; Matteo Brilli; Giulia Spini; Matteo Rossi; Bianca Roncaglia; Alessia Bani; Manuela Chiancianesi; Marco Moretto; Kristof Engelen; Giovanni Bacci 002; Francesco Pini; Emanuele G. Biondi; et al. (PLoS Comput. Biol., 2015)

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses. - Marco Moretto; Paolo Sonego; Nicolas Dierckxsens; Matteo Brilli; Luca Bianco; Daniela Ledezma-Tejeida; Socorro Gama-Castro; Marco Galardini; Chiara Romualdi; Kris Laukens; Julio Collado-Vides; Pieter Meysman; et al. (Nucleic Acids Res., 2016)

NES2RA. - Francesco Asnicar; Luca Masera; Emanuela Coller; Caterina Gallo; Nadir Sella; Thomas Tolio; Paolo Morettin; Luca Erculiani; Francesca Galante; Stanislau Semeniuta; Giulia Malacarne; Kristof Engelen; et al. (Int. J. High Perform. Comput. Appl., 2018)

First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. - Marco Moretto; Paolo Sonego; Ana B. Villaseñor-Altamirano; Kristof Engelen (BMC Bioinform., 2019)

Simulation-Based Investigation of Wind Turbine Induced Shadow Flicker on IGBT Reliability and Energy Yield in Solar Converters in Hybrid Wind-Solar Systems. - Leander Van Cappellen; Martijn Deckers; Kristof Engelen; Georgi H. Yordanov; Michael Daenen (IEEE Access, 2025)