spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data. - Kristoffer Vitting-Seerup; Bo T. Porse; Albin Sandelin; Johannes Waage (BMC Bioinform., 2014)

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase. - Hans Ienasescu; Kang Li; Robin Andersson; Morana Vitezic; Sarah Rennie; Yun Chen; Kristoffer Vitting-Seerup; Emil Lagoni; Mette Boyd; Jette Bornholdt; Michiel J. L. de Hoon; Hideya Kawaji; et al. (Database J. Biol. Databases Curation, 2016)

IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences. - Kristoffer Vitting-Seerup; Albin Sandelin (Bioinform., 2019)

CAGEfightR: analysis of 5′-end data using R/Bioconductor. - Malte Thodberg; Axel Thieffry; Kristoffer Vitting-Seerup; Robin Andersson; Albin Sandelin (BMC Bioinform., 2019)