3D-Jury: A Simple Approach to Improve Protein Structure Predictions. - Krzysztof Ginalski; Arne Elofsson; Daniel Fischer 001; Leszek Rychlewski (Bioinform., 2003)

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure. - Krzysztof Ginalski; Jakub Pas; Lucjan Stanislaw Wyrwicz; Marcin von Grotthuss; Janusz M. Bujnicki; Leszek Rychlewski (Nucleic Acids Res., 2003)

Detection of reliable and unexpected protein fold predictions using 3D-Jury. - Krzysztof Ginalski; Leszek Rychlewski (Nucleic Acids Res., 2003)

Detecting distant homology with Meta-BASIC. - Krzysztof Ginalski; Marcin von Grotthuss; Nick V. Grishin; Leszek Rychlewski (Nucleic Acids Res., 2004)

PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics. - Marcin von Grotthuss; Dariusz Plewczynski; Krzysztof Ginalski; Leszek Rychlewski; Eugene I. Shakhnovich (BMC Bioinform., 2006)

Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database. - Dariusz Plewczynski; Michal Lazniewski; Rafal Augustyniak; Krzysztof Ginalski (J. Comput. Chem., 2011)

VoteDock: Consensus docking method for prediction of protein-ligand interactions. - Dariusz Plewczynski; Michal Lazniewski; Marcin von Grotthuss; Leszek Rychlewski; Krzysztof Ginalski (J. Comput. Chem., 2011)

Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine. - Marcin Nowosielski; Marcin Hoffmann; Lucjan Stanislaw Wyrwicz; Piotr Stepniak; Dariusz Plewczynski; Michal Lazniewski; Krzysztof Ginalski; Leszek Rychlewski (J. Chem. Inf. Model., 2011)

HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking. - Dariusz Plewczynski; Anna Philips; Marcin von Grotthuss; Leszek Rychlewski; Krzysztof Ginalski (J. Comput. Biol., 2014)

Probabilistic Approach to Predicting Substrate Specificity of Methyltransferases. - Teresa Szczepinska; Jan Kutner; Michal Kopczynski; Krzysztof Pawlowski; Andrzej Dziembowski; Andrzej Kudlicki; Krzysztof Ginalski; Maga Rowicka (PLoS Comput. Biol., 2014)